Blue Collar Bioinformatics
This project started in the Harvard Chan Bioinformatics Core as a framework to analyze sequencing data. We have migrated the vision to contain templates for downstream analysis of nf-core pipelines
Check committee meetings notes 📝
Here we list all the reports we mantain currently:
Thank you for considering contributing to our project! We welcome contributions that enhance the functionality, usability, and reliability of this repository, dedicated to providing template reports for performing downstream analysis of genomic data.
Fast Contributions:
- Go to the report specific repostiory
- Report an Issue: If you encounter bugs, have a feature request, or see opportunities for improvement, please open a draftissue in the project board, or an issue in the specific report repository listed above.
- Improve Documentation: Contributions to improve documentation, such as correcting typos or adding examples and explanations, are always welcome.
- Code Contributions: If you want to contribute code, please read the guidelines below to ensure your contribution can be smoothly integrated.
Too many to list here!
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Repositories
- rnaseq-reports Public template
code templates and training materials to perform downs-tream analysis from nf-core RNAseq pipelines
- singlecell-reports Public template
code templates and training materials to perform downstream analysis from scRNA preprocessing
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- spatial-reports Public template
Reports in markdown, quarto and notebooks to work with spatial single cell from multiple platforms and with multiple packages
- .github Public
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