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1. docker-snakemake docker-snakemake Public

   Dockerfiles to create best practice containers for running and developing Snakemake workflows

   Dockerfile 1

2. metaseqlite metaseqlite Public

   A Python 3 compatible version of the major features of metaseq, a framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data

   Python

3. Convert GTF to TSS BED file Convert GTF to TSS BED file

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   #!/bin/sh

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   # Creates a sorted BED file with all transcript TSS locations with the Ensembl transcript id for the name column

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   # This script does this for the Mouse vM19 annotaions, but should work just fine with Human GTF as well

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   wget ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_mouse/release_M19/gencode.vM19.annotation.gtf.gz

4. Create NCBI RefSeq Select BED12 file Create NCBI RefSeq Select BED12 file

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   ## Create NCBI RefSeq Select BED12 file

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   This gist shows you how to create a BED file in [BED12 format](https://ensembl.org/info/website/upload/bed.html) containing every protein-coding NCBI RefSeq Select gene with the exons annotated as blocks in the BED file.

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   1. First, download a TSV file of [NCBI RefSeq Select](https://www.ncbi.nlm.nih.gov/refseq/refseq_select) genes

5. docker-copier docker-copier Public

   Alpine-based Docker container for securely running the copier template rendering software

   Dockerfile 3 1

6. Unbound DNS block list cronjob Unbound DNS block list cronjob

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   #!/bin/sh

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   # This script updates malware and phishing filters for unbound DNS resolver

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   # To use it, place in /etc/cron.daily/unbound-filter-update and chmod 0755 /etc/cron.daily/unbound-filter-update

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   # Get filter of potentially unwanted programs (PUPs)