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collaborativebioinformatics

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GeneVar GeneVar Public

Jupyter Notebook 13 3
Mosaicome Mosaicome Public

Shell 13 3
Sniphles Sniphles Public

Sniphles is a read-based phasing approach for phased variant calling of structural variants.

Python 12 2
STRdust STRdust Public

Python 12 3
BioGraphRAG BioGraphRAG Public

Implement a system to use GNN and/or LLM to use knowledge graphs to integrate literature with knowledge graphs made from large public datasets (CIVIC, TCGA, CPTAC)

Python 11 3
nibSV nibSV Public

Nim 9 4

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Tahoe100M_population_dynamics Public
Group 6

collaborativebioinformatics/Tahoe100M_population_dynamics's past year of commit activity

Python 2 MIT 1 0 1 Updated Aug 29, 2026
inTRuder Public
Identifying novel TR loci and motifs in individuals that are not in the reference genome

collaborativebioinformatics/inTRuder's past year of commit activity

Jupyter Notebook 0 MIT 1 13 9 Updated Aug 29, 2026
Chimpanzee-isoform-diversity Public
we love chimpanzee

collaborativebioinformatics/Chimpanzee-isoform-diversity's past year of commit activity

Jupyter Notebook 3 MIT 0 0 0 Updated Aug 28, 2026
SoMosaic_group12 Public

collaborativebioinformatics/SoMosaic_group12's past year of commit activity

Jupyter Notebook 1 MIT 1 0 0 Updated Aug 28, 2026
SVantigen Public
Team 8

collaborativebioinformatics/SVantigen's past year of commit activity

Nextflow 5 MIT 3 2 0 Updated Aug 28, 2026
Haploblock_SV Public
Team 8 at SV Hackathon 2026

collaborativebioinformatics/Haploblock_SV's past year of commit activity

Python 2 MIT 0 0 1 Updated Aug 28, 2026
benchmark_reference_genome_assembly Public
Benchmarking of how the quality of the reference genome assembly affects the discovery of structural variants, using aligners: Minimap2 & Winnowmap

collaborativebioinformatics/benchmark_reference_genome_assembly's past year of commit activity

Python 1 MIT 1 0 1 Updated Aug 28, 2026
scOnco-scorer Public

collaborativebioinformatics/scOnco-scorer's past year of commit activity

R 0 MIT 0 0 0 Updated Aug 28, 2026
Foldback_hunters Public

collaborativebioinformatics/Foldback_hunters's past year of commit activity

Python 1 MIT 1 0 0 Updated Aug 28, 2026
linear-scaling-pangenome-sv Public

collaborativebioinformatics/linear-scaling-pangenome-sv's past year of commit activity

Python 0 MIT 3 0 0 Updated Aug 28, 2026

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