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corneliusroemer (Cornelius Roemer) · GitHub

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corneliusroemer/README.md

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  1. nextstrain/ncov nextstrain/ncov Public

    Nextstrain build for SARS-CoV-2

    Python 1.4k 408

  2. cov-lineages/pango-designation cov-lineages/pango-designation Public

    Repository for suggesting new lineages that should be added to the current scheme

    Jupyter Notebook 1.1k 103

  3. nextstrain/augur nextstrain/augur Public

    Pipeline components for real-time phylodynamic analysis

    Python 277 134

  4. nextstrain/nextclade nextstrain/nextclade Public

    Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

    Rust 261 67

  5. loculus-project/loculus loculus-project/loculus Public

    An open-source software package to power microbial genomic databases

    TypeScript 73 13

  6. pathoplexus/pathoplexus pathoplexus/pathoplexus Public

    An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.

    MDX 58 8

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