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Diener Lab · GitHub

Diener Lab

Our lab at the Meduni Graz.

We are a lab led by Christian Diener at the Medical University of Graz and study the human gut microbiome through an approach that combines ecology, systems biology, and metabolism. We are also big fans of equitable and accessible Science and participate in various efforts to share our research, software, and teaching materials.

Like us, microbes rarely live alone and may behave quite differently when around others or in a new environment. We are interested in the complex metabolic interactions taking place between microbes, the host, and their environment, and how those can be leveraged to understand and design complex microbial communities. We mainly use computational strategies but also run experiments in our wetlab.

The lab forms part of the Austrian FWF Cluster of Excellence Microbiomes Drive Planetary Health and collaborates with other researchers and industry all across the globe. If you are interested in learning more feel free to check out our team, lab values, research areas, and publications.

📕 wiki

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  1. pipelines pipelines Public

    A monorepo containing all of our Nextflow pipelines.

    Nextflow 1 1

  2. website website Public

    Our lab website.

    HTML 1

  3. miso miso Public

    An R package containing a bunch of helpers for microbiome data analysis.

    R

Repositories

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Showing 10 of 13 repositories
  • 2026_strain_course Public

    Materials and code for the 2026 Course "Strain-level metabolic modeling of microbial communities"

    dienerlab/2026_strain_course's past year of commit activity
    Jupyter Notebook 0 Apache-2.0 0 0 0 Updated Oct 29, 2026
  • website Public

    Our lab website.

    dienerlab/website's past year of commit activity
    HTML 0 Apache-2.0 1 0 0 Updated Oct 27, 2026
  • pipelines Public

    A monorepo containing all of our Nextflow pipelines.

    dienerlab/pipelines's past year of commit activity
    Nextflow 1 Apache-2.0 1 0 0 Updated Aug 21, 2026
  • gapseq-docker Public

    A docker container for gapseq.

    dienerlab/gapseq-docker's past year of commit activity
    Dockerfile 0 Apache-2.0 0 0 1 Updated Aug 5, 2026
  • medi Public Forked from Gibbons-Lab/medi

    Metagenomic Estimation of Dietary Intake and Content.

    dienerlab/medi's past year of commit activity
    Nextflow 0 Apache-2.0 8 0 0 Updated Aug 5, 2026
  • miso Public

    An R package containing a bunch of helpers for microbiome data analysis.

    dienerlab/miso's past year of commit activity
    R 0 Apache-2.0 0 0 0 Updated Jul 29, 2026
  • talks Public

    Repository for public talk slides.

    dienerlab/talks's past year of commit activity
    JavaScript 1 Apache-2.0 0 0 0 Updated Jul 13, 2026
  • 2026_meduni_microbiome Public

    Materials for the Meduni microbiome course.

    dienerlab/2026_meduni_microbiome's past year of commit activity
    JavaScript 0 Apache-2.0 0 0 0 Updated Mar 20, 2026
  • 2024_micom_intro Public

    A short intro to MICOM.

    dienerlab/2024_micom_intro's past year of commit activity
    Jupyter Notebook 1 Apache-2.0 0 0 0 Updated Mar 20, 2026
  • template Public template

    Repository containing scripts and additional data for [PROJECT].

    dienerlab/template's past year of commit activity
    0 Apache-2.0 0 0 0 Updated Apr 29, 2025

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