drbecavin/epiScanpy: Episcanpy: Epigenomics Single Cell Analysis in Python · GitHub

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docs		docs
episcanpy		episcanpy
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LICENSE.txt		LICENSE.txt
MANIFEST.in		MANIFEST.in
README.rst		README.rst
pytest.ini		pytest.ini
requirements.txt		requirements.txt
setup.cfg		setup.cfg
setup.py		setup.py
umapenhancer_CG_Luoetal.png		umapenhancer_CG_Luoetal.png
versioneer.py		versioneer.py

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EpiScanpy – Epigenomics single cell analysis in python

EpiScanpy is a toolkit to analyse single-cell open chromatin (scATAC-seq) and single-cell DNA methylation (for example scBS-seq) data. EpiScanpy is the epigenomic extension of the very popular scRNA-seq analysis tool Scanpy (Genome Biology, 2018) [Wolf18]. For more information, read scanpy documentation.

The documentation for epiScanpy is available here. If epiScanpy is useful to your research, consider citing epiScanpy.