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feat: all paths between two nodes (#828) · graphframes/graphframes@360ffe5 · GitHub

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Commit 360ffe5

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SemyonSinchenko
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feat: all paths between two nodes (#828)
* feat: all paths between two nodes * fix: let's have some 2.12 vs 2.13 fun * feat: adressing comments * feat: addressing comments * feat: PySpark bindings * docs: add docs page * feat: propagate all the agg_nbrs args * fix: 3.5.x does not respect spark.checkpoint.dir
1 parent 427e06d commit 360ffe5

12 files changed

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‎connect/src/main/protobuf/graphframes.proto‎

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@@ -40,6 +40,7 @@ message GraphFramesAPI {
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RandomWalkEmbeddings rw_embeddings = 23;
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AggregateNeighbors aggregate_neighbors = 24;
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NeighborhoodAwareCDLP neighborhood_aware_cdlp = 25;
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AllPaths all_paths = 26;
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}
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}
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@@ -88,6 +89,17 @@ message BFS {
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int32 max_path_length = 4;
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}
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message AllPaths {
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ColumnOrExpression from_expr = 1;
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ColumnOrExpression to_expr = 2;
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ColumnOrExpression edge_filter = 3;
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int32 max_path_length = 4;
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bool is_directed = 5;
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int32 checkpoint_interval = 6;
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bool use_local_checkpoints = 7;
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optional StorageLevel storage_level = 8;
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}
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message ConnectedComponents {
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string algorithm = 1;
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int32 checkpoint_interval = 2;

‎connect/src/main/scala/org/apache/spark/sql/graphframes/GraphFramesConnectUtils.scala‎

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@@ -202,6 +202,17 @@ object GraphFramesConnectUtils {
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.maxPathLength(bfsProto.getMaxPathLength)
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.run()
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}
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case proto.GraphFramesAPI.MethodCase.ALL_PATHS => {
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val allPathsProto = apiMessage.getAllPaths
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graphFrame.allPaths
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.toExpr(parseColumnOrExpression(allPathsProto.getToExpr, planner))
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.fromExpr(parseColumnOrExpression(allPathsProto.getFromExpr, planner))
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.edgeFilter(parseColumnOrExpression(allPathsProto.getEdgeFilter, planner))
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.maxPathLength(allPathsProto.getMaxPathLength)
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.setIsDirected(allPathsProto.getIsDirected)
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.setUseLocalCheckpoints(allPathsProto.getUseLocalCheckpoints)
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.run()
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}
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case proto.GraphFramesAPI.MethodCase.CONNECTED_COMPONENTS => {
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val cc = apiMessage.getConnectedComponents
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val ccBuilder = graphFrame.connectedComponents

‎core/src/main/scala/org/graphframes/GraphFrame.scala‎

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@@ -701,6 +701,15 @@ class GraphFrame private (
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*/
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def bfs: BFS = new BFS(this)
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/**
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* Enumerate all paths between source and destination vertices.
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*
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* See [[org.graphframes.lib.AllPaths]] for details.
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*
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* @group stdlib
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*/
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def allPaths: AllPaths = new AllPaths(this)
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/**
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* Aggregate information from neighboring vertices and edges through a controlled traversal.
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*

‎core/src/main/scala/org/graphframes/lib/AllPaths.scala‎

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/*
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* Licensed to the Apache Software Foundation (ASF) under one or more
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* contributor license agreements. See the NOTICE file distributed with
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* this work for additional information regarding copyright ownership.
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* The ASF licenses this file to You under the Apache License, Version 2.0
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* (the "License"); you may not use this file except in compliance with
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* the License. You may obtain a copy of the License at
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*
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* http://www.apache.org/licenses/LICENSE-2.0
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*
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* Unless required by applicable law or agreed to in writing, software
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* distributed under the License is distributed on an "AS IS" BASIS,
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* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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* See the License for the specific language governing permissions and
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* limitations under the License.
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*/
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package org.graphframes.lib
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import org.apache.spark.sql.Column
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import org.apache.spark.sql.DataFrame
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import org.apache.spark.sql.functions.array
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import org.apache.spark.sql.functions.array_contains
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import org.apache.spark.sql.functions.col
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import org.apache.spark.sql.functions.concat
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import org.apache.spark.sql.functions.expr
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import org.apache.spark.sql.graphframes.SparkShims
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import org.graphframes.GraphFrame
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import org.graphframes.WithCheckpointInterval
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import org.graphframes.WithDirection
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import org.graphframes.WithIntermediateStorageLevel
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import org.graphframes.WithLocalCheckpoints
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/**
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* Computes all simple paths between source and destination vertices.
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*
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* This algorithm enumerates paths up to `maxPathLength` hops. It supports directed and undirected
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* traversal as well as optional edge filtering. It returns all simple paths between source and
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* destination vertices. Here the term "simple" means no repeated vertices. For example, if there
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* are paths A-B-C, A-D-C and the edge B-A, user asked to find all the paths between "A" and "C"
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* only A-B-C and A-D-C will be returned, but not the A-B-A-D-C. The default value of the
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* `maxPathLength` is `5`. Keep in mind that requesting `maxPathLength` of the scale of the graph
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* diameter may tend this algorithm will try to return (almost) all simple paths in the graph that
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* can create huge performance degradation or even OOM-like errors. Algorithm supports both
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* directed and undirected graphs.
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*
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* Returned DataFrame schema:
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* - `path`: array of vertex ids in traversal order
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* - `len`: number of edges in the path (Long)
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*
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* Note: in the case of undirected graph an algorithm run on the internal graph made by union
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* edges and reversed edges. It is assummed that graph does not have multi-edges. Results may be
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* unstable and unpredictable for the graph with multi-edges.
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*/
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class AllPaths private[graphframes] (private val graph: GraphFrame)
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extends Arguments
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with Serializable
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with WithDirection
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with WithLocalCheckpoints
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with WithCheckpointInterval
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with WithIntermediateStorageLevel {
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private var maxPathLength: Int = 5
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private var fromExpression: Column = _
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private var toExpression: Column = _
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private var edgeFilterExpression: Option[Column] = None
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/**
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* Sets the expression identifying the source (starting) vertices.
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*
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* @param value
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* a Column expression evaluated against vertex attributes to select source vertices
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* @return
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* this instance for method chaining
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*/
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def fromExpr(value: Column): this.type = {
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fromExpression = value
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this
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}
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/**
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* Sets the expression identifying the source (starting) vertices.
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*
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* @param value
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* a SQL expression string evaluated against vertex attributes to select source vertices
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* @return
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* this instance for method chaining
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*/
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def fromExpr(value: String): this.type = fromExpr(expr(value))
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/**
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* Sets the expression identifying the destination (target) vertices.
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*
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* @param value
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* a Column expression evaluated against vertex attributes to select destination vertices
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* @return
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* this instance for method chaining
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*/
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def toExpr(value: Column): this.type = {
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toExpression = value
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this
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}
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/**
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* Sets the expression identifying the destination (target) vertices.
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*
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* @param value
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* a SQL expression string evaluated against vertex attributes to select destination vertices
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* @return
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* this instance for method chaining
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*/
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def toExpr(value: String): this.type = toExpr(expr(value))
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/**
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* Sets the maximum path length (number of edges) for the enumerated paths.
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*
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* Setting a large value (e.g. on the scale of the graph diameter) may cause the algorithm to
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* attempt to collect a very large number of paths, leading to severe performance degradation or
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* out-of-memory errors. Use with caution on large or densely connected graphs.
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*
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* @param value
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* the maximum number of edges in a path; must be greater than 0. Default is 5.
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* @return
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* this instance for method chaining
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*/
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def maxPathLength(value: Int): this.type = {
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require(value > 0, s"AllPaths maxPathLength must be > 0, but was set to $value")
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maxPathLength = value
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this
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}
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/**
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* Sets an optional filter expression applied to edges during traversal. Only edges satisfying
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* this condition will be considered.
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*
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* @param value
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* a Column expression evaluated against edge attributes
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* @return
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* this instance for method chaining
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*/
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def edgeFilter(value: Column): this.type = {
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edgeFilterExpression = Some(value)
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this
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}
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/**
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* Sets an optional filter expression applied to edges during traversal. Only edges satisfying
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* this condition will be considered.
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*
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* @param value
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* a SQL expression string evaluated against edge attributes
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* @return
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* this instance for method chaining
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*/
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def edgeFilter(value: String): this.type = edgeFilter(expr(value))
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/**
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* Executes the AllPaths algorithm and returns all simple paths between the specified source and
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* destination vertices.
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*
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* @return
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* a DataFrame with the following columns:
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* - `path`: an array of vertex ids in traversal order
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* - `len`: the number of edges in the path (Long)
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*/
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def run(): DataFrame = {
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require(fromExpression != null, "fromExpr is required.")
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require(toExpression != null, "toExpr is required.")
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require(
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graph.vertices.columns.toSet.intersect(Set("hop", "path", "len")).isEmpty,
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"columns `hop`, `path` and `len` are reserved by algorithm")
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val traversalGraph = if (isDirected) {
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graph
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} else {
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val edgeColumns = graph.edges.columns.toSeq
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val reversed = graph.edges.select(
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(Seq(
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col(GraphFrame.DST).alias(GraphFrame.SRC),
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col(GraphFrame.SRC).alias(GraphFrame.DST)) ++
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edgeColumns.filterNot(c => c == GraphFrame.SRC || c == GraphFrame.DST).map(col)): _*)
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GraphFrame(graph.vertices, graph.edges.unionByName(reversed))
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}
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val agg = traversalGraph.aggregateNeighbors
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.setStartingVertices(fromExpression)
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.setMaxHops(maxPathLength)
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.setTargetCondition(SparkShims.applyExprToCol(graph.spark, toExpression, "dst_attributes"))
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.setStoppingCondition(
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array_contains(col("path"), AggregateNeighbors.dstAttr(GraphFrame.ID)))
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.addAccumulator(
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"path",
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array(col(GraphFrame.ID)),
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concat(col("path"), array(AggregateNeighbors.dstAttr(GraphFrame.ID))))
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.setUseLocalCheckpoints(useLocalCheckpoints)
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.setCheckpointInterval(checkpointInterval)
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.setIntermediateStorageLevel(intermediateStorageLevel)
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edgeFilterExpression.foreach { ef =>
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agg.setEdgeFilter(SparkShims.applyExprToCol(graph.spark, ef, "edge_attributes"))
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}
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agg
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.run()
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.select(col("path"), col("hop").alias("len"))
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.distinct()
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}
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}

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