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The Griffith Lab

Academic Lab of Obi and Malachi Griffith

183 followers
United States of America
https://griffithlab.org

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regtools regtools Public

Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.

C++ 140 30
GenVisR GenVisR Public

Genome data visualizations

R 227 65
pVACtools pVACtools Public

Python 184 81
VAtools VAtools Public

A set of tools to annotate VCF files with expression and readcount data

Python 31 13
rnabio.org rnabio.org Public

website for the rnaseq course

SCSS 127 44
civic-v2 civic-v2 Public

CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer

TypeScript 31 7

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civic-v2 Public
CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer

griffithlab/civic-v2's past year of commit activity

TypeScript 31 MIT 7 86 32 Updated Aug 19, 2026
pVACtools Public

griffithlab/pVACtools's past year of commit activity

Python 184 BSD-3-Clause-Clear 81 88 10 Updated Aug 19, 2026
civicpy Public
A python interface for the CIViC db application

griffithlab/civicpy's past year of commit activity

Python 13 MIT 8 30 2 Updated Aug 19, 2026
VAtools Public
A set of tools to annotate VCF files with expression and readcount data

griffithlab/VAtools's past year of commit activity

Python 31 MIT 13 0 0 Updated Aug 17, 2026
neoag_vaccine_scripts Public

griffithlab/neoag_vaccine_scripts's past year of commit activity

Python 0 MIT 2 9 1 Updated Aug 14, 2026
docker-pvactools Public

griffithlab/docker-pvactools's past year of commit activity

Python 3 8 0 0 Updated Aug 12, 2026
civic-pubtator Public
Version of tmvar working on ARM with detailed instructions and examples

griffithlab/civic-pubtator's past year of commit activity

Shell 1 MIT 0 1 0 Updated Aug 10, 2026
rnabio.org Public
website for the rnaseq course

griffithlab/rnabio.org's past year of commit activity

SCSS 127 MIT 44 20 1 Updated Aug 9, 2026
ImmunoNX_protocol Public Forked from wustl-oncology/immuno_gcp_wdl_local
Tutorial for running immuno.wdl on Google Cloud

griffithlab/ImmunoNX_protocol's past year of commit activity

4 MIT 2 0 1 Updated Aug 6, 2026
unconference-site Public
Website program for CIViC hackathon/curation unconference

griffithlab/unconference-site's past year of commit activity

Astro 0 0 0 1 Updated Aug 6, 2026

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