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johnlees (John Lees) · GitHub

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  1. bacpop/PopPUNK bacpop/PopPUNK Public

    PopPUNK 👨‍🎤 (POPulation Partitioning Using Nucleotide Kmers)

    Python 109 22

  2. bacpop/PopPIPE bacpop/PopPIPE Public

    Population analysis PIPEline 🛠🧬

    Python 26 7

  3. mgalardini/pyseer mgalardini/pyseer Public

    SEER, reimplemented in python 🐍🔮

    Python 138 29

  4. bacpop/unitig-caller bacpop/unitig-caller Public

    Methods to determine sequence element (unitig) presence/absence

    C++ 27 3

  5. bacpop/ska.rust bacpop/ska.rust Public

    Split k-mer analysis – version 2

    Rust 105 9

  6. bacpop/sketchlib.rust bacpop/sketchlib.rust Public

    Fast sequence distance estimates

    Rust 31 6

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