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maxulysse (Maxime U Garcia) ยท GitHub

Overview Repositories 98 Projects Packages Stars 683
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maxulysse/README.md

๐Ÿ‘‹ Hi there ๐Ÿง‘โ€๐Ÿ’ป

  • I'm a bioinformatician, from Marseille ๐Ÿ‡ซ๐Ÿ‡ท , living in Stockholm ๐Ÿ‡ธ๐Ÿ‡ช
  • I'm interested in Reproducible Research (and obviously open-source), Cancer, Automation, Containers, Data Integration, Visualization and much more...
  • I enjoy doing pipelines with Nextflow, that are reproducible using Conda, Docker, Singularity... and can run anywhere, including AWS, GCP, Azure...
  • I'm part of the core team that administrates the @nf-core community

My Github stats ๐Ÿ“Š

git.io/awesome-stats-card

๐Ÿ”Ž Find me around the web ๐ŸŒŽ

  • I share the occasional blog post and my presentations on my own Astro website
  • I sometimes share informations on LinkedIn
  • I keep track of my publications with ORCID and Google Scholar
  • I ฮผblog, but mainly RT on BlueSky, Mastodon or Twitter/X.
  • I share food and cats pictures on Instagram with sometimes an occasional landscape
  • If you find anything in my repo useful and want to say thanks, you can Buy me a coffee

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  1. maxulysse.github.io maxulysse.github.io Public

    My own personal website

    Astro 2 4

  2. compile-latex compile-latex Public

    Simple beamer/latex compiler using Nextflow, provided with Docker container

    Nextflow 8

  3. nf-core/sarek nf-core/sarek Public

    Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

    Nextflow 595 545

  4. nf-core/rnavar nf-core/rnavar Public

    gatk4 RNA variant calling pipeline

    Nextflow 61 47

  5. nf-core/seqinspector nf-core/seqinspector Public

    Dedicated QC-only pipeline for sequencing data. The pipeline will run a (potentially large) set of QC tools and can output global and group specific Multiqc reports. The pipeline is targeting core โ€ฆ

    Nextflow 28 44

  6. nf-core/references nf-core/references Public

    nf-core/references is a bioinformatics pipeline that build references, for multiple use cases

    Nextflow 22 6

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