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merfre (Merideth) · GitHub

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  1. Adaptive_Sequencing_Analysis_Workflow Adaptive_Sequencing_Analysis_Workflow Public

    Snakemake workflow for ONT adaptive sequencing data integrating QC, taxonomy (Kraken2), rejected read analysis, and control vs adaptive comparison.

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  2. Database_Creation_Workflow Database_Creation_Workflow Public

    Reproducible Snakemake workflow for building reference databases (Kraken2, CAT, BLAST) for metagenomic analysis.

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  3. MMCAW MMCAW Public

    Reproducible Snakemake workflow for ONT metagenomic microbiome analysis with multi-tool taxonomic assignment, consensus comparison, and diversity analysis.

    Python

  4. Hull_Microbiome_Cluster_Workflow Hull_Microbiome_Cluster_Workflow Public

    Snakemake workflow for microbiome research cluster analysis using fastp, Kraken2, and BIOM.

    Python

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