Memorial Sloan Kettering

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vcf2maf vcf2maf Public

Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

Perl 419 219
facets facets Public

Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.

R 164 70
ngs-filters ngs-filters Public

Filters for false-positive mutation calls in NGS

R 34 20
iCallSV iCallSV Public

Forked from rhshah/iCallSV

A Framework to call Structural Variants from NGS based datasets

Python 3 1
mutation-signatures mutation-signatures Public

Create mutation signatures from MAF's, and decompose them into Stratton signatures

R 61 28

Repositories

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smile-dashboard Public

mskcc/smile-dashboard's past year of commit activity

TypeScript 0 AGPL-3.0 10 0 4 Updated Aug 28, 2026
ridgeback Public
Toil API

mskcc/ridgeback's past year of commit activity

Python 1 Apache-2.0 2 38 4 Updated Aug 28, 2026
igo-sample-submission-node Public
Sample Submission API written in node.js

mskcc/igo-sample-submission-node's past year of commit activity

JavaScript 0 2 1 (1 issue needs help) 31 Updated Aug 27, 2026
phylowgs Public Forked from morrislab/phylowgs
Application for inferring subclonal composition and evolution from whole-genome sequencing data.

mskcc/phylowgs's past year of commit activity

Python 0 GPL-3.0 56 0 0 Updated Aug 27, 2026
neoantigen-pipeline Public
Pipeline for computing neoantigen qualities from DNA and RNA-Seq data

mskcc/neoantigen-pipeline's past year of commit activity

Nextflow 9 MIT 1 13 1 Updated Aug 26, 2026
beagle Public
Voyager Backend

mskcc/beagle's past year of commit activity

Python 2 Apache-2.0 7 99 (2 issues need help) 13 Updated Aug 26, 2026
tempo Public
CCS research pipeline to process WES and WGS TN pairs

mskcc/tempo's past year of commit activity

Groovy 7 0 52 (1 issue needs help) 12 Updated Aug 26, 2026
igo-lims-plugins Public
Sapio LIMS customizations to workflows for IGO

mskcc/igo-lims-plugins's past year of commit activity

Java 2 0 1 10 Updated Aug 25, 2026
smile-server Public

mskcc/smile-server's past year of commit activity

Java 2 4 88 (1 issue needs help) 1 Updated Aug 20, 2026
acela-cli Public

mskcc/acela-cli's past year of commit activity

Python 0 0 0 0 Updated Aug 17, 2026