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NAVis · GitHub

NAVis

Tools for Neuron Analysis & Visualization

We make tools for processing and analysing of neurobiological data.

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  1. navis navis Public

    Python library for analysis of neuroanatomical data.

    Python 117 37

  2. pymaid pymaid Public

    Python library to interface with CATMAID servers. Fully interoperable with navis.

    Python 24 11

  3. skeletor skeletor Public

    Extraction of 3D skeletons from meshes.

    Python 260 30

  4. fafbseg-py fafbseg-py Public

    Tools to work with the FlyWire connectome. Fully interoperable with navis.

    Python 23 10

  5. navis-flybrains navis-flybrains Public

    Transforms for navis that enable mapping between different Drosophila template brains.

    Jupyter Notebook 19 3

  6. sparse-cubes sparse-cubes Public

    Mesh generation, skeletonization, voxelization of sparse 3D data.

    Python 26 1

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