OpenSSL 3 does not seem to set the MGF1 hash algorithm to the RSA-PSS hash by default. In other words, calling EVP_PKEY_CTX_set_rsa_pss_keygen_md does not seem to update the MGF1 hash algorithm. Calling EVP_PKEY_CTX_set_rsa_pss_keygen_mgf1_md after EVP_PKEY_CTX_set_rsa_pss_keygen_md seems to fix this difference in behavior between OpenSSL 1.1.1 and OpenSSL 3.
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OpenSSL 3 does not seem to set the MGF1 hash algorithm to the RSA-PSS hash by default. In other words, calling EVP_PKEY_CTX_set_rsa_pss_keygen_md does not seem to update the MGF1 hash algorithm. Calling EVP_PKEY_CTX_set_rsa_pss_keygen_mgf1_md after EVP_PKEY_CTX_set_rsa_pss_keygen_md seems to fix this difference in behavior between OpenSSL 1.1.1 and OpenSSL 3.
Refs: #39999