openCOBRA

Community driven constraint-based reconstruction, analysis and modelling of biology

Overview
Repositories
Projects
Packages
People

Pinned Loading

cobrapy cobrapy Public

COBRApy is a package for constraint-based modeling of metabolic networks.

Python 589 241
cobratoolbox cobratoolbox Public

The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:

MATLAB 290 338
COBRA.jl COBRA.jl Public

High-level, high-performance, constraint-based reconstruction and analysis in Julia

Julia 63 32
MASS-Toolbox MASS-Toolbox Public

Mass Action Stoichiometric Simulation (MASS) Toolbox

Mathematica 13 8
MATLAB.devTools MATLAB.devTools Public

MATLAB Development Tools

MATLAB 28 35
memote memote Public

memote – the genome-scale metabolic model test suite

HTML 152 32

Repositories

Type Language Sort

COBRA.models Public
Set of models used for testing COBRA code in continuous integration environments

opencobra/COBRA.models's past year of commit activity

Julia 0 4 0 0 Updated Oct 3, 2026
escher Public

opencobra/escher's past year of commit activity

JavaScript 8 6 2 0 Updated Sep 29, 2026
optlang Public
optlang - sympy based mathematical programming language

opencobra/optlang's past year of commit activity

Python 271 Apache-2.0 54 32 1 Updated Sep 25, 2026
cobratoolbox Public
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:

opencobra/cobratoolbox's past year of commit activity

MATLAB 290 338 65 (1 issue needs help) 5 Updated Sep 23, 2026
swiglpk Public
Simple swig bindings for the GNU Linear Programming Kit

opencobra/swiglpk's past year of commit activity

Python 30 GPL-3.0 11 2 2 Updated Sep 18, 2026
cobrapy Public
COBRApy is a package for constraint-based modeling of metabolic networks.

opencobra/cobrapy's past year of commit activity

Python 589 GPL-2.0 241 76 (4 issues need help) 23 Updated Sep 17, 2026
Medusa Public
Analysis of ensembles of metabolic network reconstructions

opencobra/Medusa's past year of commit activity

Python 22 MIT 9 28 22 Updated Sep 3, 2026
COBRA.tutorials Public
Repository of tutorials for The COBRA Toolbox

opencobra/COBRA.tutorials's past year of commit activity

MATLAB 25 61 3 0 Updated Aug 24, 2026
COBRA.papers Public
Repository for scripts related to reproducing the results of an individual publication

opencobra/COBRA.papers's past year of commit activity

MATLAB 10 16 1 1 Updated Aug 11, 2026
cobrapy-website Public

opencobra/cobrapy-website's past year of commit activity

HTML 1 LGPL-3.0 8 0 2 Updated Aug 11, 2026