Bioinformatics Scientist with hands-on experience in NGS data analysis, spanning genomics and transcriptomics. Currently working remotely as a bioinformatics data analyst, where I translate raw sequencing data into reproducible, interpretable results. I have a habit of picking up public datasets and playing around until I find something the original study missed; most of the projects here started exactly that way.

Genomics

• WGS & WES analysis: preprocessing, alignment, variant calling (GATK Best Practices)
• Targeted exome sequencing; germline variant filtering & clinical annotation
• Reference genome alignment (BWA-MEM), post-alignment processing (samtools, Picard)

Transcriptomics

• Bulk RNA-seq: differential gene expression, non-coding RNA analysis
• Single-cell RNA-seq (10x Genomics, Seurat): clustering, cell-type annotation, marker identification
• In progress: Spatial transcriptomics

Pipeline & Software

• Languages: R, Python, Bash
• Tools: GATK, FastQC, Fastp, BWA, samtools, bcftools, DESeq2, Seurat
• In progress: Nextflow pipeline development

Wet Lab

• DNA/RNA extraction
• PCR
• Gel electrophoresis
• Library QC

• Spatial transcriptomics analysis
• Nextflow pipeline development

• razmia.sabahat@gmail.com
• LinkedIn
• ORCID