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samanthaleejensen · GitHub

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  1. compare_svs compare_svs Public

    These scripts were developed for a project at UCLA to compare structural variants found by various tools to known structural variants. It includes a very primitive structural variant type categorizer.

    Python

  2. uniqueperm uniqueperm Public

    R

  3. svfindermanual svfindermanual Public

    Guide to installing, using, and interpreting structural variant finders. Includes example scripts for running tools on UCLA's Hoffman2 and a description of how to use the machine learning combinati…

    Shell

  4. samanthaleejensen.github.io samanthaleejensen.github.io Public

  5. plumbCNV plumbCNV Public

    Forked from nicholasjcooper/plumbCNV

    generalized version of Nicholas Cooper's plumbCNV for CNV calling from microarray data

    R

  6. merge_and_filter merge_and_filter Public

    Code for merging Plink genotyping files with different reference genomes and genotyping chips.

    Shell

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