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History for docs - smithlabcode/methpipe · GitHub

This repository was archived by the owner on Oct 17, 2022. It is now read-only.

Commits

History for

Commits on Jul 8, 2022

Updating docs to reflect change in mlml output from nan to NA for sites where there is not enough data to do the calculations
andrewdavidsmith
committed
c4ec767
separating radmeth programs to different cpps with their own unique names
guilhermesena1
committed
8a99637

Commits on Jun 5, 2022

adding a section for selectsites on the manual
guilhermesena1
committed
5c82d0f

Commits on Jun 3, 2022

adding $ to some bash commands that were lacking it
guilhermesena1
committed
8a02c20
adding the correct set of commands for fast-liftover
guilhermesena1
committed
e7b8e5b

Commits on May 20, 2022

fixing a LaTeX compile problem and updating the statistics flag in the abismal command
sena
committed
abf84e1

Commits on May 11, 2022

Update methpipe-manual.tex
hchetia
authored
2300200

Commits on Oct 13, 2021

Update column index in the awk command in the MethPipe because of changes in the SAM format
PSmaruj
committed
1756f2c

Commits on Oct 12, 2021

Two typos in the MethPipe manual
PSmaruj
committed
b632425
Two typos in commands: -s in abismal, in Estimating bisulfite conversion rate
PSmaruj
committed
daf4c3b

Commits on Sep 20, 2021

reverting previous commit
guilhermesena1
committed
2c58df1
MathPipe manual in .md format added
PSmaruj
committed
37ce052

Commits on Jul 26, 2021

added back references in methpipe-manual
terencewtli
committed
aa59d57
Modified the roimethstat description.
hevans_25_
committed
6b312c9

Commits on Dec 20, 2020

fixing the syntax of the duplicate-remover program
guilhermesena1
committed
35d0b69
updates to the methpipe manual to reflect abismal and SAM file usage
guilhermesena1
committed
9f3bded

Commits on Sep 27, 2020

Commits on Jun 9, 2020

Minor updates to PMD section of manual.
bdecato
committed
178e71e

Commits on May 28, 2019

Minor formatting
andrewdavidsmith
committed
a3da6eb

Commits on May 24, 2019

manual: fixed incorrect example for roimethstat
andrewdavidsmith
committed
dd4bcbb

Commits on Jan 17, 2019

Add some specifications of input files for merge-methcounts
masarunakajima
committed
389ff60

Commits on Nov 21, 2018

Added improvements to the PMD program including bin size selection, boundary score output, support for multiple methylomes, and support for both beta-binomial and beta emission distribution modelin…
bdecato
committed
2a316de

Commits on Jul 14, 2018

fixed uncompiled reference; fixed the mistake about radmeth output file format
xjlizji
committed
b7a4221

Commits on Mar 8, 2018

Minor formatting and typos
bdecato
committed
20c29c9

Commits on Aug 8, 2017

Updated language in manual to fix inaccuracy related to radmeth output.
bdecato
committed
ac817da

Commits on May 26, 2017

Updated manual to explain radmeth -1 p-values
bdecato
committed
60cffd3

Commits on Oct 20, 2016

Fix typo of program name
jqujqu
committed
db32945

Commits on Aug 3, 2016

Fixed manual sections for radmeth.
mengzhou
committed
6a0476f

Commits on Jun 6, 2016

Commits on Dec 3, 2015

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