RADMeth: Regression Analysis of Differential Methilation is a software for computing individual differentially methylated sites and genomic regions in whole genome bisulfite sequencing (WGBS) data.

Egor Dolzhenko dolzhenk@usc.edu http://smithlabresearch.org/

Before attempting to compile RADMeth please make sure that GNU Scientific Library (http://www.gnu.org/software/gsl/) is installed on your system Alternatively, you can download pre-compiled binaries for either Linux or Mac from http://smithlabresearch.org/software/radmeth/

To compile RADMeth, enter the program's root directory (e.g. radmeth/) and
execute

make

After the compilation, the binaries can be found in radmeth/bin/

Please see the manual, which can be obtained at http://smithlabresearch.org/software/radmeth/

Copyright (C) 2013 University of Southern California and Egor Dolzhenko Andrew D Smith

Authors: Andrew D. Smith and Egor Dolzhenko

This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.

This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
GNU General Public License for more details.