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Try 3: Boost update by WardBrian · Pull Request #3185 · stan-dev/math · GitHub

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Try 3: Boost update - #3185

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SteveBronder merged 7 commits into
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boost-update-187
Jun 3, 2025
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Merged

Try 3: Boost update#3185
SteveBronder merged 7 commits into
developfrom
boost-update-187

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WardBrian commented May 20, 2025 •
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Summary

Tests

Side Effects

Release notes

Checklist

  • Copyright holder: (fill in copyright holder information)

    The copyright holder is typically you or your assignee, such as a university or company. By submitting this pull request, the copyright holder is agreeing to the license the submitted work under the following licenses:
    - Code: BSD 3-clause (https://opensource.org/licenses/BSD-3-Clause)
    - Documentation: CC-BY 4.0 (https://creativecommons.org/licenses/by/4.0/)

  • the basic tests are passing

    • unit tests pass (to run, use: ./runTests.py test/unit)
    • header checks pass, (make test-headers)
    • dependencies checks pass, (make test-math-dependencies)
    • docs build, (make doxygen)
    • code passes the built in C++ standards checks (make cpplint)

  • the code is written in idiomatic C++ and changes are documented in the doxygen

  • the new changes are tested

WardBrian mentioned this pull request May 20, 2025
Closed
WardBrian marked this pull request as draft May 20, 2025 20:11

stan-buildbot commented May 21, 2025

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Name Old Result New Result Ratio Performance change( 1 - new / old )
arma/arma.stan 0.3 0.3 1.0 0.17% faster
low_dim_corr_gauss/low_dim_corr_gauss.stan 0.01 0.01 1.04 3.66% faster
gp_regr/gen_gp_data.stan 0.02 0.02 1.06 5.65% faster
gp_regr/gp_regr.stan 0.09 0.09 1.04 3.74% faster
sir/sir.stan 66.25 67.67 0.98 -2.14% slower
irt_2pl/irt_2pl.stan 3.92 3.88 1.01 1.2% faster
eight_schools/eight_schools.stan 0.06 0.05 1.04 3.47% faster
pkpd/sim_one_comp_mm_elim_abs.stan 0.24 0.24 1.01 0.97% faster
pkpd/one_comp_mm_elim_abs.stan 18.6 18.38 1.01 1.16% faster
garch/garch.stan 0.41 0.4 1.02 1.85% faster
low_dim_gauss_mix/low_dim_gauss_mix.stan 2.6 2.58 1.01 0.91% faster
arK/arK.stan 1.73 1.71 1.01 1.06% faster
gp_pois_regr/gp_pois_regr.stan 2.68 2.69 1.0 -0.31% slower
low_dim_gauss_mix_collapse/low_dim_gauss_mix_collapse.stan 8.43 8.37 1.01 0.71% faster
performance.compilation 183.79 175.87 1.05 4.31% faster
Mean result: 1.0183289036904979

Jenkins Console Log
Blue Ocean
Commit hash: a82154c8a93e75b4af2ddaa645f722d4b5046e0d

Machine information No LSB modules are available. Distributor ID: Ubuntu Description: Ubuntu 20.04.3 LTS Release: 20.04 Codename: focal

CPU:
Architecture: x86_64
CPU op-mode(s): 32-bit, 64-bit
Byte Order: Little Endian
Address sizes: 46 bits physical, 48 bits virtual
CPU(s): 80
On-line CPU(s) list: 0-79
Thread(s) per core: 2
Core(s) per socket: 20
Socket(s): 2
NUMA node(s): 2
Vendor ID: GenuineIntel
CPU family: 6
Model: 85
Model name: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz
Stepping: 4
CPU MHz: 2400.000
CPU max MHz: 3700.0000
CPU min MHz: 1000.0000
BogoMIPS: 4800.00
Virtualization: VT-x
L1d cache: 1.3 MiB
L1i cache: 1.3 MiB
L2 cache: 40 MiB
L3 cache: 55 MiB
NUMA node0 CPU(s): 0,2,4,6,8,10,12,14,16,18,20,22,24,26,28,30,32,34,36,38,40,42,44,46,48,50,52,54,56,58,60,62,64,66,68,70,72,74,76,78
NUMA node1 CPU(s): 1,3,5,7,9,11,13,15,17,19,21,23,25,27,29,31,33,35,37,39,41,43,45,47,49,51,53,55,57,59,61,63,65,67,69,71,73,75,77,79
Vulnerability Gather data sampling: Mitigation; Microcode
Vulnerability Itlb multihit: KVM: Mitigation: VMX disabled
Vulnerability L1tf: Mitigation; PTE Inversion; VMX conditional cache flushes, SMT vulnerable
Vulnerability Mds: Mitigation; Clear CPU buffers; SMT vulnerable
Vulnerability Meltdown: Mitigation; PTI
Vulnerability Mmio stale data: Mitigation; Clear CPU buffers; SMT vulnerable
Vulnerability Reg file data sampling: Not affected
Vulnerability Retbleed: Mitigation; IBRS
Vulnerability Spec rstack overflow: Not affected
Vulnerability Spec store bypass: Mitigation; Speculative Store Bypass disabled via prctl
Vulnerability Spectre v1: Mitigation; usercopy/swapgs barriers and __user pointer sanitization
Vulnerability Spectre v2: Mitigation; IBRS; IBPB conditional; STIBP conditional; RSB filling; PBRSB-eIBRS Not affected; BHI Not affected
Vulnerability Srbds: Not affected
Vulnerability Tsx async abort: Mitigation; Clear CPU buffers; SMT vulnerable
Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc art arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm 3dnowprefetch cpuid_fault epb cat_l3 cdp_l3 invpcid_single pti intel_ppin ssbd mba ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm mpx rdt_a avx512f avx512dq rdseed adx smap clflushopt clwb intel_pt avx512cd avx512bw avx512vl xsaveopt xsavec xgetbv1 xsaves cqm_llc cqm_occup_llc cqm_mbm_total cqm_mbm_local dtherm ida arat pln pts hwp hwp_act_window hwp_epp hwp_pkg_req pku ospke md_clear flush_l1d arch_capabilities

G++:
g++ (Ubuntu 9.4.0-1ubuntu1~20.04) 9.4.0
Copyright (C) 2019 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

Clang:
clang version 10.0.0-4ubuntu1
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/bin

wds15 commented May 21, 2025

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is the referred to commit with the full boost distribution above added to the stan-math repo? If so, then git has already swallowed those 140MB...

WardBrian commented May 21, 2025

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I'm planning on rewriting history before any merge, so it shouldn't end up affecting git's size in the future. At any rate, I'm more worried about end users than developers when it comes to internet speeds/file sizes.

WardBrian requested a review from SteveBronder May 21, 2025 19:29
WardBrian linked an issue May 21, 2025 that may be closed by this pull request
Update boost to 1.87 #3141
Closed
WardBrian marked this pull request as ready for review May 21, 2025 19:29

stan-buildbot commented May 21, 2025

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Name Old Result New Result Ratio Performance change( 1 - new / old )
arma/arma.stan 0.42 0.48 0.89 -12.76% slower
low_dim_corr_gauss/low_dim_corr_gauss.stan 0.01 0.01 0.82 -21.31% slower
gp_regr/gen_gp_data.stan 0.03 0.03 0.92 -8.74% slower
gp_regr/gp_regr.stan 0.1 0.12 0.84 -18.73% slower
sir/sir.stan 72.97 83.76 0.87 -14.79% slower
irt_2pl/irt_2pl.stan 4.63 5.91 0.78 -27.75% slower
eight_schools/eight_schools.stan 0.07 0.07 1.0 0.43% faster
pkpd/sim_one_comp_mm_elim_abs.stan 0.27 0.33 0.8 -25.11% slower
pkpd/one_comp_mm_elim_abs.stan 20.45 22.18 0.92 -8.44% slower
garch/garch.stan 0.47 0.62 0.76 -32.33% slower
low_dim_gauss_mix/low_dim_gauss_mix.stan 3.05 3.13 0.97 -2.7% slower
arK/arK.stan 1.99 2.04 0.98 -2.33% slower
gp_pois_regr/gp_pois_regr.stan 3.52 3.39 1.04 3.68% faster
low_dim_gauss_mix_collapse/low_dim_gauss_mix_collapse.stan 11.04 10.52 1.05 4.73% faster
performance.compilation 196.42 225.71 0.87 -14.92% slower
Mean result: 0.901175496625768

Jenkins Console Log
Blue Ocean
Commit hash: a82154c8a93e75b4af2ddaa645f722d4b5046e0d

Machine information No LSB modules are available. Distributor ID: Ubuntu Description: Ubuntu 20.04.3 LTS Release: 20.04 Codename: focal

CPU:
Architecture: x86_64
CPU op-mode(s): 32-bit, 64-bit
Byte Order: Little Endian
Address sizes: 46 bits physical, 48 bits virtual
CPU(s): 80
On-line CPU(s) list: 0-79
Thread(s) per core: 2
Core(s) per socket: 20
Socket(s): 2
NUMA node(s): 2
Vendor ID: GenuineIntel
CPU family: 6
Model: 85
Model name: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz
Stepping: 4
CPU MHz: 3366.571
CPU max MHz: 3700.0000
CPU min MHz: 1000.0000
BogoMIPS: 4800.00
Virtualization: VT-x
L1d cache: 1.3 MiB
L1i cache: 1.3 MiB
L2 cache: 40 MiB
L3 cache: 55 MiB
NUMA node0 CPU(s): 0,2,4,6,8,10,12,14,16,18,20,22,24,26,28,30,32,34,36,38,40,42,44,46,48,50,52,54,56,58,60,62,64,66,68,70,72,74,76,78
NUMA node1 CPU(s): 1,3,5,7,9,11,13,15,17,19,21,23,25,27,29,31,33,35,37,39,41,43,45,47,49,51,53,55,57,59,61,63,65,67,69,71,73,75,77,79
Vulnerability Gather data sampling: Mitigation; Microcode
Vulnerability Itlb multihit: KVM: Mitigation: VMX disabled
Vulnerability L1tf: Mitigation; PTE Inversion; VMX conditional cache flushes, SMT vulnerable
Vulnerability Mds: Mitigation; Clear CPU buffers; SMT vulnerable
Vulnerability Meltdown: Mitigation; PTI
Vulnerability Mmio stale data: Mitigation; Clear CPU buffers; SMT vulnerable
Vulnerability Reg file data sampling: Not affected
Vulnerability Retbleed: Mitigation; IBRS
Vulnerability Spec rstack overflow: Not affected
Vulnerability Spec store bypass: Mitigation; Speculative Store Bypass disabled via prctl
Vulnerability Spectre v1: Mitigation; usercopy/swapgs barriers and __user pointer sanitization
Vulnerability Spectre v2: Mitigation; IBRS; IBPB conditional; STIBP conditional; RSB filling; PBRSB-eIBRS Not affected; BHI Not affected
Vulnerability Srbds: Not affected
Vulnerability Tsx async abort: Mitigation; Clear CPU buffers; SMT vulnerable
Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc art arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm 3dnowprefetch cpuid_fault epb cat_l3 cdp_l3 invpcid_single pti intel_ppin ssbd mba ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm mpx rdt_a avx512f avx512dq rdseed adx smap clflushopt clwb intel_pt avx512cd avx512bw avx512vl xsaveopt xsavec xgetbv1 xsaves cqm_llc cqm_occup_llc cqm_mbm_total cqm_mbm_local dtherm ida arat pln pts hwp hwp_act_window hwp_epp hwp_pkg_req pku ospke md_clear flush_l1d arch_capabilities

G++:
g++ (Ubuntu 9.4.0-1ubuntu1~20.04) 9.4.0
Copyright (C) 2019 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

Clang:
clang version 10.0.0-4ubuntu1
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/bin

SteveBronder merged commit 9f23455 into develop Jun 3, 2025
WardBrian deleted the boost-update-187 branch June 3, 2025 22:35
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Update boost to 1.87

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