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sumeromer/README.md

Dr. Ömer Sümer

Applied Scientist & AI/ML Engineer Medical AI · Computer Vision · LLM Systems · Trustworthy AI

I build reliable AI/ML systems for medical, scientific, and regulated domains, from research prototypes to deployable software.

After a PhD and postdoctoral research in computer vision and medical AI, I am focused on bringing robust, useful AI systems into industry.

🔬 Focus areas

  • Medical AI & computer vision Computational pathology, surgical vision, segmentation, detection, and scene understanding.

  • LLM systems & agents Local and cloud-based RAG, multi-agent pipelines, LangChain/LangGraph, LlamaIndex, CrewAI, and MCP-based workflows.

  • Trustworthy and regulated AI Practical AI governance, validation, documentation, and lifecycle processes for the EU AI Act, GDPR, and ISO/IEC 42001. TÜV Rheinland certified AI Officer / KI-Beauftragter.

🧩 Highlights

RAG over the EU AI Act: A hands-on tutorial for building a fully local RAG pipeline using Qwen2.5 to answer questions about the EU AI Act. The project covers a simple RAG system design to answer practical AI governance questions. (Slides in German)

🛠️ Technical skills

AI/ML PyTorch, scikit-learn, MLflow, Weights & Biases, computer vision, medical image analysis, model evaluation

LLMs & agents LangChain, LangGraph, LlamaIndex, CrewAI, RAG, MCP, OpenAI/Codex, Claude

Software engineering Python, C/C++, CUDA, Bash, Git, CI/CD, Docker, REST APIs, clean code, OOP

Data & scientific computing NumPy, pandas, SciPy, OpenCV, scikit-image, PIL, HDF5

Cloud & databases AWS, Azure ML, PostgreSQL, SQL, MongoDB

🎓 Education

  • Ph.D., Computer Science University of Tübingen, Germany magna cum laude

  • B.Sc. / M.Sc., Electronics Engineering


Based in Germany · open to Applied Scientist / AI–ML Engineer roles · EN · DE · TR

Pinned Loading

  1. rag-tutorial rag-tutorial Public

    Python

  2. cell-segmentation cell-segmentation Public

    Jupyter Notebook

  3. facial-gestalt-xai facial-gestalt-xai Public

    Jupyter Notebook 1

  4. 10xgenomics-dataset-scraper 10xgenomics-dataset-scraper Public

    Python 2

  5. medical-coding-reproducibility medical-coding-reproducibility Public

    Forked from JoakimEdin/medical-coding-reproducibility

    Jupyter Notebook

  6. instanseg instanseg Public

    Forked from instanseg/instanseg

    Python


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