superphy

Online predictive genomics

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semantic semantic Public

SuperPhy for the semantic web

Web Ontology Language 18 3
insilico-subtyping insilico-subtyping Public

Phylotyper: Predicting subtypes from WGS using phylogenetic trees and ancestral reconstruction

Python 5 1
AMR_Predictor AMR_Predictor Public

Machine learning methods to predict the anti-microbial resistance of Salmonella.

Python 4 1
spfy spfy Public

Spfy: an integrated graph database for real-time prediction of Escherichia coli phenotypes and downstream comparative analyses

Python 5 2
kmer kmer Public

Using machine learning to predict E. coli phenotypes

TeX 1 2
phenores phenores Public

Predicting bacterial AMR phenotypes from genotypes

Jupyter Notebook 1 1

Repositories

Type Language Sort

VMR_backend_scripts Public archive Forked from gwajnberg/VMR_backend_scripts

superphy/VMR_backend_scripts's past year of commit activity

Python 0 2 0 0 Updated Jan 21, 2025
ont-nextflow Public

superphy/ont-nextflow's past year of commit activity

Nextflow 0 1 0 2 Updated Apr 12, 2023
prairiedog Public
next-gen pangenome graphs for predictive genomics

superphy/prairiedog's past year of commit activity

Python 0 0 25 2 Updated Dec 26, 2022
grouch Public
Front-end for superphy/spfy. Support submission of analysis tasks

superphy/grouch's past year of commit activity

JavaScript 0 Apache-2.0 1 14 25 Updated Dec 9, 2022
acheron Public
Machine learning platform for bacterial genome sequence analysis

superphy/acheron's past year of commit activity

Python 1 Apache-2.0 2 0 0 Updated Dec 24, 2021
AMR_Predictor Public
Machine learning methods to predict the anti-microbial resistance of Salmonella.

superphy/AMR_Predictor's past year of commit activity

Python 4 1 0 0 Updated Aug 14, 2020
kmer Public
Using machine learning to predict E. coli phenotypes

superphy/kmer's past year of commit activity

TeX 1 2 0 0 Updated Jan 24, 2020
Brucella Public

superphy/Brucella's past year of commit activity

Python 0 1 0 0 Updated Dec 30, 2019
Brucella_Pipeline Public archive Forked from ashlynns/Brucella_Snakemake_Test_Env
A pipeline for the identification of unique nucleotide markes across species of Brucella

superphy/Brucella_Pipeline's past year of commit activity

Python 0 1 0 0 Updated Dec 13, 2019
Brucella_Project_Preliminary Public

superphy/Brucella_Project_Preliminary's past year of commit activity

Python 0 0 0 0 Updated Dec 10, 2019