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gotoh-algorithm

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lignum-vitae / goombay

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Python implementation of several sequence alignment algorithms such as Waterman-Smith-Beyer, Gotoh, and Needleman-Wunsch intended to calculate distance, show alignment, and display the underlying matrices.

python distance smith-waterman needleman-wunsch python3 similarity jaro-winkler levenshtein-distance alignment longest-common-subsequence sequence-alignment hamming-distance jaro longest-common-substring shortest-common-supersequence gotoh hirschberg gotoh-algorithm ratcliff-obershelp waterman-smith-beyer
  • Updated Jun 2, 2026
  • Python

RJPenic / OSALG

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Optimal Sequence Aligner allowing for Long Gaps

bioinformatics simd sequence-alignment gotoh gotoh-algorithm
  • Updated May 19, 2020
  • C++

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