MDAnalysis is a Python library to analyze molecular dynamics simulations.

Interaction Fingerprints for protein-ligand complexes and more

Jupyter Dock is a set of Jupyter Notebooks for performing molecular docking protocols interactively, as well as visualizing, converting file formats and analyzing the results.

Fast and accurate aerodynamic modeling using general numerical lifting-line theory.

a python package for the interfacial analysis of molecular simulations

A command line and python toolkit featured artificial intelligence × ab initio for complex chemistry systems research.

MDAnalysis tool to calculate membrane curvature.

pKa estimates for proteins using an ensemble approach

Parallel algorithms for MDAnalysis

a logistics and persistence engine for the analysis of molecular dynamics trajectories

Materials for the 2021 PRACE Workshop @ SurfSARA

User friendly molecular dynamics simulation combining Modeller, OpenMM and Google Colab: A complete guide

Command line interface for MDAnalysis

Analyse Rotational Diffusion Tensor from MD Simulations

Molecular visualization for MDAnalysis with MolecularNodes in Blender

Molecular Dynamics Simulation of Alanine Dipeptide and Dihedral Angle Analysis

Access to data for workshops and extended tests of MDAnalysis.

Analyse molecular dynamics simulations of interfacial and confined systems.

SAPT energy calculator built using MDAnalysis and Psi4

Solvent network analysis. Hop is a python package based on MDAnalysis to analyze solvation dynamics.