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metatranscriptomic-analysis

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Here are 6 public repositories matching this topic...

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pnnl / mercat

Star 18

MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data

python diversity plotly protein dask fastq k-mer-counting k-mer-frequency divideandconquer metagenomic-analysis metatranscriptomic-analysis kmer-frequency-count nucleotides diversity-estimation database-independent-analysis
  • Updated Nov 30, 2022
  • Python

raw-lab / mercat2

Star 13

MerCat2: python code for versatile k-mer counting and diversity estimation for database independent property analysis for metaome data

python diversity plotly protein dask fastq k-mer-counting k-mer-frequency divideandconquer metagenomic-analysis metatranscriptomic-analysis kmer-frequency-count nucleotides diversity-estimation database-independent-analysis multiomics multiomics-data
  • Updated Jun 9, 2026
  • HTML

WJT0925 / WJT0925.github.io

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Ph.D. student from State Key Laboratory of Marine Environmental Science of XMU

genome-analysis metatranscriptomic-analysis dinoflagellates
  • Updated Nov 18, 2021

AmberBozward / SNH_AIH_spatial_transcriptome

Star 0

Workflows and code for spatial and meta-transcriptomic analysis of seronegative hepatitis, autoimmune hepatitis and donor liver samples.

r metatranscriptomic-analysis metatranscriptomics liver visium cosmx
  • Updated Nov 5, 2025
  • R

hermidalc / dragonfish

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A fast, efficient, and accurate functional and taxonomic meta-omic profiler built on Pufferfish and the ccdBG

metagenomics metagenomic-analysis metatranscriptomic-analysis metatranscriptomics microbiome-analysis taxonomic-classification microbiome-workflow metagenomic-pipeline functional-profiling taxonomic-profiling metatranscriptomic-pipeline
  • Updated Nov 7, 2024
  • Python

kholoud-mamdouh / Bioinformatics

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Analysing and Visualizing (EDA) and Cluster data Modeling for metagenomics and metatranscriptomics data to different microbial ecosystems

visualization python bioinformatics metagenomic-analysis metatranscriptomic-analysis dataanalysis
  • Updated Feb 15, 2023
  • Jupyter Notebook

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