🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data

Accurate, easy and integrated suit to compare RNA samples with different degradation levels, quantify decay rates per-transcript and correct for degradation-induced artifacts in differential gene/transcript comparisons

Running state-of-the-art RNA-seq abundance quantification software "kallisto" on UPMEM DPU system

UpPipe is an RNA abundance quantification design on a real processing-near-memory system (UPMEM DPU); the paper of this project is published in Design Automation Conference (DAC) 2023