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tomography

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invesalius / invesalius3

Star 802

3D medical imaging reconstruction software

dicom medical-imaging segmentation tomography magnetic-resonance-imaging medical-image-processing dicom-viewer tomographic-images
  • Updated Aug 28, 2026
  • Python

CERN / TIGRE

Star 801

TIGRE: Tomographic Iterative GPU-based Reconstruction Toolbox

python image-reconstruction matlab cuda toolbox tomography x-ray gpus tigre
  • Updated Aug 14, 2026
  • MATLAB

deepinv / deepinv

Star 797

DeepInverse: a PyTorch library for solving imaging inverse problems using deep learning

deep-learning image-reconstruction pytorch mri medical-imaging tomography microscopy super-resolution computational-imaging deblurring denoising self-supervised diffusion-models plug-and-play-priors unrolled-algorithms
  • Updated Aug 28, 2026
  • Python

odlgroup / odl

Star 433

Operator Discretization Library https://odl.readthedocs.io/

python optimization mathematics prototyping tomography imaging inverse-problems discretization
  • Updated Mar 11, 2026
  • Python

PMEAL / porespy

Star 418

A set of tools for characterizing and analyzing 3D images of porous materials

python scientific-visualization tomography image-analysis voxel-generator porous-media 3d-images porous-materials porespy
  • Updated Aug 11, 2026
  • Python

tomopy / tomopy

Star 395

Tomographic Reconstruction in Python

python toolbox tomography reconstruction
  • Updated Oct 3, 2025
  • Python

OpenChemistry / tomviz

Sponsor
Star 364

Cross platform, open source application for the processing, visualization, and analysis of 3D tomography data

visualization python open-source opengl open-science scientific-visualization tomography materials-science 3d-graphics
  • Updated Aug 20, 2026
  • C++

matteo-ronchetti / torch-radon

Star 279

Computational Tomography in PyTorch

cuda pytorch tomography inverse-problems hacktoberfest radon-transform shearlet-transform
  • Updated Sep 22, 2023
  • Python

OpenEIT / OpenEIT

Star 265

Python based dashboard for real-time Electrical Impedance Tomography including image reconstruction using Back Projection, Graz Consensus and Gauss Newton methods

python image-reconstruction tomography inverse-problems biomedical-image-processing eit biomedical-instrumentation electrical-impedance-tomography
  • Updated Jul 22, 2025
  • Python

eitcom / pyEIT

Star 249

Python based toolkit for Electrical Impedance Tomography

python mesh-generation tomography inverse-problems eit electrical-impedance-tomography finite-element-methods eit-imaging
  • Updated Dec 12, 2025
  • Python

llnl / LEAP

Star 249

comprehensive library of 3D transmission Computed Tomography (CT) algorithms with Python and C++ APIs, a PyQt GUI, and fully integrated with PyTorch

machine-learning image-reconstruction artificial-intelligence medical-imaging tomography leap ct vam computed-tomography beamhardening abel-transform cone-beam spect iterative-reconstruction parallel-beam metal-artifact-reduction bhc helical-reconstruction tomographic-reconstruction scatter-correction
  • Updated Jul 25, 2026
  • Cuda

sandialabs / pyGSTi

Star 185

A python implementation of Gate Set Tomography

quantum-computing characterization tomography gst qcvv snl-quantum-computing scr-2018
  • Updated Aug 28, 2026
  • Python

kuixu / awesome-cryoem

Star 159

A collaborative list of awesome CryoEM (Cryo Electron Microscopy) resources.

tomography electron-microscopy cryo-em 3d-reconstruction density-map model-building cryoem protein-structures 3d-denoise
  • Updated Jan 25, 2021

TomographicImaging / CIL

Star 154

A versatile python framework for tomographic imaging

python tomography optimisation
  • Updated Aug 28, 2026
  • Python

dkazanc / TomoPhantom

Star 135

Software to generate 2D/3D/4D analytical phantoms and their Radon transforms (parallel beam) for image processing

machine-learning image image-reconstruction matlab image-classification phantom tomography reconstruction radon denoising-images computed-tomography deblurring 3d-phantoms astra-toolbox
  • Updated May 14, 2026
  • C

EO-College / tomography_tutorial

Star 132

A tutorial for Synthetic Aperture Radar Tomography

python gdal remote-sensing tomography sar earth-observation
  • Updated Mar 27, 2023
  • Jupyter Notebook

JeffFessler / MIRT.jl

Star 125

MIRT: Michigan Image Reconstruction Toolbox (Julia version)

image-reconstruction julia lasso mirt mri tomography sparse-coding inverse-problems optimization-algorithms k-space nufft sinogram
  • Updated Jul 21, 2026
  • Julia

yijiang1 / fold_slice

Star 119

Electron/X-ray ptychography and tomography/laminography

gpt tomography computational-science microscopy xray-diffraction ptychography
  • Updated Nov 23, 2024
  • MATLAB

adler-j / learned_primal_dual

Star 108

Learned Primal-Dual Reconstruction

python machine-learning mathematics tomography inverse-problems computed-tomography odl
  • Updated Jun 23, 2019
  • Python

cicwi / tomosipo

Star 107

A library for painless 3D tomographic reconstruction

cuda python3 scientific-computing tomography
  • Updated Jul 28, 2026
  • Python

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