- Delete API.md documentation file
- Delete CONFIGURATION.md documentation file
- Delete ERROR_HANDLING.md documentation file
- Delete IMPLEMENTATION_SUMMARY.md documentation file
- Delete INDEX.md documentation file
- Delete README.md documentation file
- Delete SETUP_GUIDE.md documentation file
- Delete TROUBLESHOOTING.md documentation file
- Update test-mcp-connection.js with latest changes
- Consolidate MCP documentation into main project documentation

The previous implementation used a custom {tool, parameters} HTTP
protocol incompatible with MCP JSON-RPC 2.0. Clients were also
instructed to connect via `command: node -e <script>`, which fails
on machines without system Node.js installed.

- Replace server.ts with McpServer + StreamableHTTPServerTransport
  from @modelcontextprotocol/sdk (already in dependencies)
- Register all 5 tools using mcpServer.tool() with Zod schemas
- Use stateless transport mode (no session management needed)
- Delete router.ts (replaced by SDK tool registration)
- Delete example-usage.ts (unused)
- Trim MCPToolRequest/MCPToolResponse from types.ts (no longer needed)
- Update MCPSettings.vue to show correct HTTP URL config snippet

Clients now connect with no system Node required:
  { "url": "http://127.0.0.1:3000/mcp", "type": "http" }

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

- Create fresh McpServer + StreamableHTTPServerTransport per POST request
  (matches the SDK stateless example - per-request lifecycle)
- Pre-parse request body and pass as third arg to transport.handleRequest
- GET/DELETE /mcp now return 405 (no SSE stream in stateless mode)
- Shared state (ConnectionManager, ExecutionHistoryDB, handlers) stays on
  MCPServerImpl and is accessed via closure from each per-request server
- Call closeAllConnections() on stop() to prevent EADDRINUSE on restart
- Clean up transport + server on res.close

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

1. PHP version/phar mismatch: getLocalPharClient() now falls back to the
   highest available phar (client-8.4.phar) when the exact version for
   the installed PHP (e.g. 8.5) doesn't exist.

2. Loader arg sent to phar: standard loader names ('laravel', 'symfony')
   were passed as --loader=<base64> to the phar, causing it to eval the
   decoded string as PHP and fail with a parse error. The phar auto-detects
   laravel/symfony from the project path — only custom loaders need --loader.

3. SQLite object binding: phar output is TWEAKPHP_RESULT:{...json...}.
   After JSON.parse() the result becomes a JS object, which better-sqlite3
   cannot bind (RangeError: Too few parameter values were provided). Fixed
   by stringifying the output before the DB insert in both handlers.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

- execute-php/execute-with-loader: type output as unknown in result
  interfaces and local variable — JSON.parse can return any type
- execute-with-loader: detectFramework and validateFrameworkPath now
  skip local fs.existsSync checks for non-local connections (docker,
  ssh, kubectl, vapor) where the path refers to a remote filesystem
- execute-with-loader: pass params.projectPath to client.execute() so
  an explicit project path is honoured rather than silently ignored
- client.base/local/docker/ssh/kubectl/vapor: add optional projectPath
  param to execute() — each client uses it to override the connection's
  default project path when provided
- server: enforce 1 MB body size limit on POST /mcp requests (413
  response + req.destroy() on overflow)

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

Keeps the interface in sync with the updated execute() signature in
client.base.ts and all concrete implementations.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

preload.ts:
- Store IPC listener wrappers in a Map keyed by original callback so
  that removeListener(channel, callback) can find and remove the
  correct wrapper function — previously the wrapper was a fresh
  anonymous function each time so removeListener was a no-op
- Remove duplicate invoke property from IpcRenderer interface and
  implementation (caused TS2300 duplicate identifier errors)

settings.ts / MCPSettings.vue:
- Add ipcMain.handle('settings.save') — awaitable counterpart to the
  fire-and-forget 'settings.store' channel
- mcpEnabled setter now awaits invoke('settings.save') before sending
  'mcp.settings-changed', guaranteeing settings are written to disk
  before the main process reads them to start/stop the MCP server

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

… header

server.ts: req.destroy() was called before res.end(), so the 413
response never reached the client. Now the response is flushed first
and req.destroy() is called in the res.end() callback.

test-mcp-connection.js: add Accept: application/json, text/event-stream
header — required by StreamableHTTPServerTransport (SDK enforces this
on POST /mcp requests).

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

…ss tool handlers