Allow running via docker-compose - #268
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December 18, 2021 01:35
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@thesophiaxu does this error tell you sth.? dgraph-alpha_1 | I1218 01:18:16.981741 17 log.go:34] Writes flushed. Stopping compactions now...
dgraph-alpha_1 | I1218 01:18:19.921042 17 log.go:34] DropPrefix done
dgraph-alpha_1 | I1218 01:18:20.110022 17 log.go:34] Resuming writes
dgraph-alpha_1 | I1218 01:18:20.548691 17 index.go:777] Deleting indexes for _definition
dgraph-alpha_1 | I1218 01:18:21.168764 17 index.go:777] Deleting indexes for type
dgraph-alpha_1 | I1218 01:18:21.248473 17 log.go:34] DropPrefix called for [type type]
dgraph-alpha_1 | I1218 01:18:21.296645 17 log.go:34] Writes flushed. Stopping compactions now...
dgraph-alpha_1 | I1218 01:18:22.770101 17 log.go:34] DropPrefix done
dgraph-alpha_1 | I1218 01:18:22.810433 17 log.go:34] Resuming writes
dgraph-alpha_1 | I1218 01:18:23.007675 17 index.go:777] Deleting indexes for pkgManifest
dgraph-alpha_1 | I1218 01:18:23.359344 17 index.go:887] Computing prefix index for attr unigraph.id and tokenizers []
dgraph-alpha_1 | I1218 01:18:23.604031 17 index.go:905] Deleting index for attr unigraph.id and tokenizers [exact]
dgraph-alpha_1 | I1218 01:18:23.892072 17 index.go:777] Deleting indexes for unigraph.id
dgraph-alpha_1 | I1218 01:18:23.953281 17 log.go:34] DropPrefix called for [
unigraph.id
unigraph.id
unigraph.id
unigraph.id]
dgraph-alpha_1 | I1218 01:18:23.958643 17 log.go:34] Writes flushed. Stopping compactions now...
dgraph-alpha_1 | I1218 01:18:24.855062 17 log.go:34] Dropping prefix at level 6 (1 tableGroups)
dgraph-alpha_1 | I1218 01:18:27.959212 17 log.go:34] DropPrefix done
dgraph-alpha_1 | I1218 01:18:28.004197 17 log.go:34] Resuming writes
dgraph-alpha_1 | I1218 01:18:28.328211 17 index.go:777] Deleting indexes for unigraph.origin
dgraph-alpha_1 | I1218 01:18:28.386486 17 log.go:34] DropPrefix called for [unigraph.origin unigraph.origin]
dgraph-alpha_1 | I1218 01:18:28.497329 17 log.go:34] Writes flushed. Stopping compactions now...
dgraph-alpha_1 | I1218 01:18:29.028735 17 log.go:34] Resuming writes
dgraph-alpha_1 | I1218 01:18:29.355442 17 index.go:940] Rebuilding index for attr _value.%dt and tokenizers [hour]
dgraph-alpha_1 | I1218 01:18:29.344418 17 index.go:940] Rebuilding index for attr _value.% and tokenizers [fulltext trigram hash]
dgraph-alpha_1 | I1218 01:18:29.344425 17 index.go:940] Rebuilding index for attr unigraph.id and tokenizers [exact]
dgraph-alpha_1 | I1218 01:18:29.344464 17 index.go:1129] Rebuilding reverse index for _value
dgraph-alpha_1 | I1218 01:18:29.344447 17 index.go:1129] Rebuilding reverse index for type
dgraph-alpha_1 | panic: runtime error: index out of range [16777216] with length 106
dgraph-alpha_1 |
dgraph-alpha_1 | goroutine 242 [running]:
dgraph-alpha_1 | github.com/dgraph-io/badger/v2/skl.(*Arena).getNode(...)
dgraph-alpha_1 | /go/pkg/mod/github.com/dgraph-io/badger/v2@v2.0.1-rc1.0.20201112230511-741de05a1330/skl/arena.go:95
dgraph-alpha_1 | github.com/dgraph-io/badger/v2/skl.(*Skiplist).getNext(...)
dgraph-alpha_1 | /go/pkg/mod/github.com/dgraph-io/badger/v2@v2.0.1-rc1.0.20201112230511-741de05a1330/skl/skl.go:198
dgraph-alpha_1 | github.com/dgraph-io/badger/v2/skl.(*Skiplist).findLast(0xc00005dc00)
dgraph-alpha_1 | /go/pkg/mod/github.com/dgraph-io/badger/v2@v2.0.1-rc1.0.20201112230511-741de05a1330/skl/skl.go:386 +0xbb
dgraph-alpha_1 | github.com/dgraph-io/badger/v2/skl.(*Skiplist).Empty(...)
dgraph-alpha_1 | /go/pkg/mod/github.com/dgraph-io/badger/v2@v2.0.1-rc1.0.20201112230511-741de05a1330/skl/skl.go:377
dgraph-alpha_1 | github.com/dgraph-io/badger/v2.(*DB).DropPrefix(0xc00005dc00, {0xc0004e9560, 0x1a1b309, 0x2})
dgraph-alpha_1 | /go/pkg/mod/github.com/dgraph-io/badger/v2@v2.0.1-rc1.0.20201112230511-741de05a1330/db.go:1647 +0x339
dgraph-alpha_1 | github.com/dgraph-io/dgraph/posting.(*IndexRebuild).DropIndexes(0xc0004e94d0, {0x1c23548, 0xc0018a7a40})
dgraph-alpha_1 | /dgraph/posting/index.go:778 +0x233
dgraph-alpha_1 | github.com/dgraph-io/dgraph/worker.runSchemaMutation.func4()
dgraph-alpha_1 | /dgraph/worker/mutation.go:240 +0x34
dgraph-alpha_1 | github.com/dgraph-io/dgraph/worker.runSchemaMutation({0x1c23548, 0xc0018a7a40}, {0xc0018d8900, 0x10, 0x1a1e986}, 0x13)
dgraph-alpha_1 | /dgraph/worker/mutation.go:245 +0x694
dgraph-alpha_1 | github.com/dgraph-io/dgraph/worker.(*node).applyMutations(0xc0002b4380, {0x1c23548, 0xc0018a7a40}, 0xc0001ae510)
dgraph-alpha_1 | /dgraph/worker/draft.go:391 +0x82a
dgraph-alpha_1 | github.com/dgraph-io/dgraph/worker.(*node).applyCommitted(0xc0002b4380, 0xc0001ae510)
dgraph-alpha_1 | /dgraph/worker/draft.go:545 +0xc0f
dgraph-alpha_1 | github.com/dgraph-io/dgraph/worker.(*node).processApplyCh.func1({0xc000586228, 0x1, 0x0})
dgraph-alpha_1 | /dgraph/worker/draft.go:698 +0x347
dgraph-alpha_1 | github.com/dgraph-io/dgraph/worker.(*node).processApplyCh(0xc0002b4380)
dgraph-alpha_1 | /dgraph/worker/draft.go:739 +0x22c
dgraph-alpha_1 | created by github.com/dgraph-io/dgraph/worker.(*node).InitAndStartNode
dgraph-alpha_1 | /dgraph/worker/draft.go:1708 +0x4af
dgraph-alpha_1 | W1218 01:18:30.293117 1 sentry_integration.go:140] unable to read CID from file /tmp/dgraph-alpha-cid-sentry open /tmp/dgraph-alpha-cid-sentry: no such file or directory. Skip
dgraph-zero_1 | W1218 01:18:30.233459 17 pool.go:267] Connection lost with dgraph-alpha:7080. Error: rpc error: code = Unavailable desc = transport is closing
backend_1 | /app/node_modules/@grpc/grpc-js/build/src/call.js:31
backend_1 | return Object.assign(new Error(message), status);
backend_1 | ^
backend_1 |
backend_1 | Error: 14 UNAVAILABLE: Connection dropped
backend_1 | at Object.callErrorFromStatus (/app/node_modules/@grpc/grpc-js/build/src/call.js:31:26)
backend_1 | at Object.onReceiveStatus (/app/node_modules/@grpc/grpc-js/build/src/client.js:176:52)
backend_1 | at Object.onReceiveStatus (/app/node_modules/@grpc/grpc-js/build/src/client-interceptors.js:336:141)
backend_1 | at Object.onReceiveStatus (/app/node_modules/@grpc/grpc-js/build/src/client-interceptors.js:299:181)
backend_1 | at /app/node_modules/@grpc/grpc-js/build/src/call-stream.js:145:78
backend_1 | at processTicksAndRejections (node:internal/process/task_queues:76:11) {
backend_1 | code: 14,
backend_1 | details: 'Connection dropped',
backend_1 | metadata: Metadata { internalRepr: Map(0) {}, options: {} }
backend_1 | }
backend_1 | error Command failed with exit code 1.
backend_1 | info Visit https://yarnpkg.com/en/docs/cli/run for documentation about this command.
dgraph-alpha_1 | [Sentry] 2021/12/18 01:18:30 Sending fatal event [0399887ac22d44f981916d12bc6c3c69] to o318308.ingest.sentry.io project: 5208688
backend_1 | error Command failed.
backend_1 | Exit code: 1
backend_1 | Command: /usr/local/bin/node
backend_1 | Arguments: /opt/yarn-v1.22.5/lib/cli.js start dgraph-alpha:9080
backend_1 | Directory: /app/packages/unigraph-dev-backend
backend_1 | Output:
backend_1 |
backend_1 | info Visit https://yarnpkg.com/en/docs/cli/workspace for documentation about this command.
dgraph-alpha_1 | [Sentry] 2021/12/18 01:18:32 Buffer flushed successfully.
backend_1 | error Command failed with exit code 1.
backend_1 | info Visit https://yarnpkg.com/en/docs/cli/run for documentation about this command.
dgraph-alpha_1 exited with code 1
backend_1 exited with code 1
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What were the steps you did to get here?
…On Fri, Dec 17, 2021, 20:38 Martin Mauch ***@***.***> wrote:
@thesophiaxu <https://github.com/thesophiaxu> does this error tell you
sth.?
dgraph-alpha_1 | I1218 01:18:16.981741 17 log.go:34] Writes flushed. Stopping compactions now...
dgraph-alpha_1 | I1218 01:18:19.921042 17 log.go:34] DropPrefix done
dgraph-alpha_1 | I1218 01:18:20.110022 17 log.go:34] Resuming writes
dgraph-alpha_1 | I1218 01:18:20.548691 17 index.go:777] Deleting indexes for _definition
dgraph-alpha_1 | I1218 01:18:21.168764 17 index.go:777] Deleting indexes for type
dgraph-alpha_1 | I1218 01:18:21.248473 17 log.go:34] DropPrefix called for [type type]
dgraph-alpha_1 | I1218 01:18:21.296645 17 log.go:34] Writes flushed. Stopping compactions now...
dgraph-alpha_1 | I1218 01:18:22.770101 17 log.go:34] DropPrefix done
dgraph-alpha_1 | I1218 01:18:22.810433 17 log.go:34] Resuming writes
dgraph-alpha_1 | I1218 01:18:23.007675 17 index.go:777] Deleting indexes for pkgManifest
dgraph-alpha_1 | I1218 01:18:23.359344 17 index.go:887] Computing prefix index for attr unigraph.id and tokenizers []
dgraph-alpha_1 | I1218 01:18:23.604031 17 index.go:905] Deleting index for attr unigraph.id and tokenizers [exact]
dgraph-alpha_1 | I1218 01:18:23.892072 17 index.go:777] Deleting indexes for unigraph.id
dgraph-alpha_1 | I1218 01:18:23.953281 17 log.go:34] DropPrefix called for [
unigraph.id
unigraph.id
unigraph.id
unigraph.id]
dgraph-alpha_1 | I1218 01:18:23.958643 17 log.go:34] Writes flushed. Stopping compactions now...
dgraph-alpha_1 | I1218 01:18:24.855062 17 log.go:34] Dropping prefix at level 6 (1 tableGroups)
dgraph-alpha_1 | I1218 01:18:27.959212 17 log.go:34] DropPrefix done
dgraph-alpha_1 | I1218 01:18:28.004197 17 log.go:34] Resuming writes
dgraph-alpha_1 | I1218 01:18:28.328211 17 index.go:777] Deleting indexes for unigraph.origin
dgraph-alpha_1 | I1218 01:18:28.386486 17 log.go:34] DropPrefix called for [unigraph.origin unigraph.origin]
dgraph-alpha_1 | I1218 01:18:28.497329 17 log.go:34] Writes flushed. Stopping compactions now...
dgraph-alpha_1 | I1218 01:18:29.028735 17 log.go:34] Resuming writes
dgraph-alpha_1 | I1218 01:18:29.355442 17 index.go:940] Rebuilding index for attr _value.%dt and tokenizers [hour]
dgraph-alpha_1 | I1218 01:18:29.344418 17 index.go:940] Rebuilding index for attr _value.% and tokenizers [fulltext trigram hash]
dgraph-alpha_1 | I1218 01:18:29.344425 17 index.go:940] Rebuilding index for attr unigraph.id and tokenizers [exact]
dgraph-alpha_1 | I1218 01:18:29.344464 17 index.go:1129] Rebuilding reverse index for _value
dgraph-alpha_1 | I1218 01:18:29.344447 17 index.go:1129] Rebuilding reverse index for type
dgraph-alpha_1 | panic: runtime error: index out of range [16777216] with length 106
dgraph-alpha_1 |
dgraph-alpha_1 | goroutine 242 [running]:
dgraph-alpha_1 | github.com/dgraph-io/badger/v2/skl.(*Arena).getNode(...)
dgraph-alpha_1 | ***@***.***/skl/arena.go:95
dgraph-alpha_1 ***@***.***/skl/arena.go:95dgraph-alpha_1> | github.com/dgraph-io/badger/v2/skl.(*Skiplist).getNext(...)
dgraph-alpha_1 | ***@***.***/skl/skl.go:198
dgraph-alpha_1 ***@***.***/skl/skl.go:198dgraph-alpha_1> | github.com/dgraph-io/badger/v2/skl.(*Skiplist).findLast(0xc00005dc00)
dgraph-alpha_1 <http://github.com/dgraph-io/badger/v2/skl.(*Skiplist).findLast(0xc00005dc00)dgraph-alpha_1> | ***@***.***/skl/skl.go:386 +0xbb
dgraph-alpha_1 | github.com/dgraph-io/badger/v2/skl.(*Skiplist).Empty(...)
dgraph-alpha_1 | ***@***.***/skl/skl.go:377
dgraph-alpha_1 ***@***.***/skl/skl.go:377dgraph-alpha_1> | github.com/dgraph-io/badger/v2.(*DB).DropPrefix(0xc00005dc00, {0xc0004e9560, 0x1a1b309, 0x2})
dgraph-alpha_1 | ***@***.***/db.go:1647 +0x339
dgraph-alpha_1 | github.com/dgraph-io/dgraph/posting.(*IndexRebuild).DropIndexes(0xc0004e94d0, {0x1c23548, 0xc0018a7a40})
dgraph-alpha_1 | /dgraph/posting/index.go:778 +0x233
dgraph-alpha_1 | github.com/dgraph-io/dgraph/worker.runSchemaMutation.func4()
dgraph-alpha_1 <http://github.com/dgraph-io/dgraph/worker.runSchemaMutation.func4()dgraph-alpha_1> | /dgraph/worker/mutation.go:240 +0x34
dgraph-alpha_1 | github.com/dgraph-io/dgraph/worker.runSchemaMutation({0x1c23548 <http://github.com/dgraph-io/dgraph/worker.runSchemaMutation(%7B0x1c23548>, 0xc0018a7a40}, {0xc0018d8900, 0x10, 0x1a1e986}, 0x13)
dgraph-alpha_1 | /dgraph/worker/mutation.go:245 +0x694
dgraph-alpha_1 | github.com/dgraph-io/dgraph/worker.(*node).applyMutations(0xc0002b4380, {0x1c23548, 0xc0018a7a40}, 0xc0001ae510)
dgraph-alpha_1 | /dgraph/worker/draft.go:391 +0x82a
dgraph-alpha_1 | github.com/dgraph-io/dgraph/worker.(*node).applyCommitted(0xc0002b4380, 0xc0001ae510)
dgraph-alpha_1 | /dgraph/worker/draft.go:545 +0xc0f
dgraph-alpha_1 | github.com/dgraph-io/dgraph/worker.(*node).processApplyCh.func1({0xc000586228 <http://github.com/dgraph-io/dgraph/worker.(*node).processApplyCh.func1(%7B0xc000586228>, 0x1, 0x0})
dgraph-alpha_1 | /dgraph/worker/draft.go:698 +0x347
dgraph-alpha_1 | github.com/dgraph-io/dgraph/worker.(*node).processApplyCh(0xc0002b4380)
dgraph-alpha_1 <http://github.com/dgraph-io/dgraph/worker.(*node).processApplyCh(0xc0002b4380)dgraph-alpha_1> | /dgraph/worker/draft.go:739 +0x22c
dgraph-alpha_1 | created by github.com/dgraph-io/dgraph/worker.(*node).InitAndStartNode
dgraph-alpha_1 <http://github.com/dgraph-io/dgraph/worker.(*node).InitAndStartNodedgraph-alpha_1> | /dgraph/worker/draft.go:1708 +0x4af
dgraph-alpha_1 | W1218 01:18:30.293117 1 sentry_integration.go:140] unable to read CID from file /tmp/dgraph-alpha-cid-sentry open /tmp/dgraph-alpha-cid-sentry: no such file or directory. Skip
dgraph-zero_1 | W1218 01:18:30.233459 17 pool.go:267] Connection lost with dgraph-alpha:7080. Error: rpc error: code = Unavailable desc = transport is closing
backend_1 | ***@***.***/grpc-js/build/src/call.js:31
backend_1 | return Object.assign(new Error(message), status);
backend_1 | ^
backend_1 |
backend_1 | Error: 14 UNAVAILABLE: Connection dropped
backend_1 | at Object.callErrorFromStatus ***@***.***/grpc-js/build/src/call.js:31:26)
backend_1 | at Object.onReceiveStatus ***@***.***/grpc-js/build/src/client.js:176:52)
backend_1 | at Object.onReceiveStatus ***@***.***/grpc-js/build/src/client-interceptors.js:336:141)
backend_1 | at Object.onReceiveStatus ***@***.***/grpc-js/build/src/client-interceptors.js:299:181)
backend_1 | at ***@***.***/grpc-js/build/src/call-stream.js:145:78
backend_1 | at processTicksAndRejections (node:internal/process/task_queues:76:11) {
backend_1 | code: 14,
backend_1 | details: 'Connection dropped',
backend_1 | metadata: Metadata { internalRepr: Map(0) {}, options: {} }
backend_1 | }
backend_1 | error Command failed with exit code 1.
backend_1 | info Visit https://yarnpkg.com/en/docs/cli/run for documentation about this command.
dgraph-alpha_1 | [Sentry] 2021/12/18 01:18:30 Sending fatal event [0399887ac22d44f981916d12bc6c3c69] to o318308.ingest.sentry.io project: 5208688
backend_1 | error Command failed.
backend_1 | Exit code: 1
backend_1 | Command: /usr/local/bin/node
backend_1 | Arguments: /opt/yarn-v1.22.5/lib/cli.js start dgraph-alpha:9080
backend_1 | Directory: /app/packages/unigraph-dev-backend
backend_1 | Output:
backend_1 |
backend_1 | info Visit https://yarnpkg.com/en/docs/cli/workspace for documentation about this command.
dgraph-alpha_1 | [Sentry] 2021/12/18 01:18:32 Buffer flushed successfully.
backend_1 | error Command failed with exit code 1.
backend_1 | info Visit https://yarnpkg.com/en/docs/cli/run for documentation about this command.
dgraph-alpha_1 exited with code 1
backend_1 exited with code 1
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Doing the following in my PR: docker-compose build
docker-compose upAt first I got error messages that unigraph couldn't connect to dgraph, then I added the wait-for which waits until it can connect to the specified TCP address, now I'm getting this one. |
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@ebdmuir you mentioned you were working on a Docker / docker-compose version yourself. |
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FWIW this docker setup seemed to work as is for me. The UI was really slow but I don't know if that's related to docker or not. |
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This PR makes the project runnable via docker-compose.
Parts of it have been taken from #227
Currently, I'm still getting errors that need to be fixed.