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unikill066 (Nikhil I) · GitHub

Overview Repositories 54 Projects Packages Stars 47
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unikill066/README.md

💫 About Me:

🔭 I’m currently working as a Sr. Data Scientist and Neuroinformatician at the Center for Advanced Pain Studies (CAPS), where I dive into projects on machine learning models and bioinformatics pipelines for genomic analysis. 🌐 My projects span developing pipelines for spatial transcriptomics, creating object detection models for neuron identification, integrating omics and proteomics data, and automating workflows with Docker and NextFlow.

🔬 My research interests include exploring non-coding RNA datasets to uncover their roles in neuropathy and chronic pain pathways. 🧬 I’m also working with tools like AlphaFold, ESMFold, and RosettaFold to deepen our understanding of protein-folding in these processes.

👥 I’m always open to collaborations in bioinformatics, particularly on projects involving machine learning! I’m also eager to help automate sequencing data pipelines for single-cell data (CellRanger), spatial transcriptomics (SpaceRanger), Bulk-RNA-seq, ATAC-seq, and XeniumRanger, aiming for minimal manual intervention.

📘 Currently, I’m expanding my expertise in proteomics and systems neuroscience while pursuing a Master of Science in Business Analytics and Artificial Intelligence.

🌱 My journey into Neuroinformatics began as a Student Assistant with Dr. Tavares, where I developed a deep curiosity that led me to join CAPS in February 2023. I transitioned into an intern role, contributing to neuron detection and data pipeline projects.

🌄 Outside the lab, I’m always up for adventure—be it trekking, cycling new terrains, running, or camping. One memorable challenge: I once cycled 50 miles through mountainous terrain, reveling in every mile! This spirit of exploration fuels everything I do, in the lab and beyond.

🌟 Explore My Work:

Curious about my journey?

🔗 Explore my Portfolio, and get in touch!

🌐 Socials:

💻 Tech Stack:

📊 GitHub Stats:



🔝 Top Contributed Repo

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  1. agentic-rag agentic-rag Public

    This isn't just another RAG implementation, it's an agentic system that intelligently decides when and how to retrieve information.

    Python

  2. RAG-Web-Scraper-Ollama-LangChain RAG-Web-Scraper-Ollama-LangChain Public

    A powerful web crawler chatbot that extracts, indexes, and intelligently answers questions on web content using Selenium, LangChain, and Ollama's LLM.

    Python 1

  3. xenium_cell_segmentation xenium_cell_segmentation Public

    End-to-end pipeline for spinal-cord microscopy segmentation with Cellpose, tiling, and mask stitching.

    Jupyter Notebook 1 1

  4. utdal/ATACSeq-NextFlow-Pipeline utdal/ATACSeq-NextFlow-Pipeline Public

    This is an automated workflow pipeline for analyzing bulk ATAC-seq data, implemented primarily in bash scripts, and wrapped in a NextFlow workflow.

    Shell 1

  5. utdal/Bulk-RNA-Seq-Nextflow-Pipeline utdal/Bulk-RNA-Seq-Nextflow-Pipeline Public

    This is an automated workflow pipeline for analyzing and processing Bulk-RNA seq data, implemented primarily in bash, python and R, and wrapped in a NextFlow workflow to characterize the gene lands…

    Nextflow 3 2

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