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william-silversmith (William Silversmith) · GitHub

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  1. seung-lab/connected-components-3d seung-lab/connected-components-3d Public

    Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)

    C++ 458 50

  2. seung-lab/cloud-files seung-lab/cloud-files Public

    Threaded Python and CLI client library for AWS S3, Google Cloud Storage (GCS), in-memory, and the local filesystem.

    Python 45 10

  3. seung-lab/euclidean-distance-transform-3d seung-lab/euclidean-distance-transform-3d Public

    Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.

    C++ 267 42

  4. seung-lab/cloud-volume seung-lab/cloud-volume Public

    Read and write Neuroglancer datasets programmatically.

    Python 175 52

  5. seung-lab/kimimaro seung-lab/kimimaro Public

    Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

    C++ 214 29

  6. seung-lab/igneous seung-lab/igneous Public

    Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.

    Python 70 24

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