obophenotype

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human-phenotype-ontology human-phenotype-ontology Public

Ontology for the description of human clinical features

Makefile 372 71
cell-ontology cell-ontology Public

An ontology of cell types

Makefile 212 59
uberon uberon Public

An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology

Emacs Lisp 162 43
upheno upheno Public

The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.

Jupyter Notebook 87 21
bio-attribute-ontology bio-attribute-ontology Public

source files for OBA (Ontology of Biological Attributes)

Jupyter Notebook 31 13
ncbitaxon ncbitaxon Public

Build for NCBITaxon

Python 31 7

Repositories

Type Language Sort

cell-ontology Public
An ontology of cell types

obophenotype/cell-ontology's past year of commit activity

Makefile 212 CC-BY-4.0 59 335 45 Updated Sep 11, 2026
bio-attribute-ontology Public
source files for OBA (Ontology of Biological Attributes)

obophenotype/bio-attribute-ontology's past year of commit activity

Jupyter Notebook 31 CC0-1.0 13 94 12 Updated Sep 9, 2026
planaria-ontology Public
PLANA, the PLANarian Anatomy Ontology, encompasses the anatomy of developmental stages and adult biotypes of Schmidtea mediterranea.

obophenotype/planaria-ontology's past year of commit activity

Makefile 6 7 10 0 Updated Sep 8, 2026
uberon Public
An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology

obophenotype/uberon's past year of commit activity

Emacs Lisp 162 43 255 38 Updated Sep 7, 2026
developmental-mouse-anatomy-ontology Public
Ontologies for mouse anatomy and development

obophenotype/developmental-mouse-anatomy-ontology's past year of commit activity

Makefile 5 3 57 0 Updated Sep 4, 2026
human-phenotype-ontology Public
Ontology for the description of human clinical features

obophenotype/human-phenotype-ontology's past year of commit activity

Makefile 372 71 145 5 Updated Sep 3, 2026
pro_obo_slim Public
A repo to generate a pro slim for the OBO phenotype organisation

obophenotype/pro_obo_slim's past year of commit activity

Makefile 1 1 0 2 Updated Sep 2, 2026
porifera-ontology Public
An ontology covering the anatomy of Porifera (sponges)

obophenotype/porifera-ontology's past year of commit activity

Vue 6 2 12 0 Updated Aug 31, 2026
uberon-robot-plugin Public
Extra ROBOT commands for Uberon

obophenotype/uberon-robot-plugin's past year of commit activity

Java 0 BSD-3-Clause 0 0 0 Updated Aug 30, 2026
chebi_obo_slim Public
A slimmed down version of CHEBI sufficient to cover 99% of the term needs across OBO ontologies

obophenotype/chebi_obo_slim's past year of commit activity

Makefile 4 3 4 2 Updated Aug 28, 2026