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snakemake-ms-proteomics snakemake-ms-proteomics Public
Pipeline for automatic processing and quality control of mass spectrometry data
Python 14
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snakemake-crispr-guides snakemake-crispr-guides Public
A Snakemake workflow for the design of small guide RNAs (sgRNAs) for CRISPR applications.
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snakemake-ont-bacterial-variants snakemake-ont-bacterial-variants Public
A Snakemake workflow for the identification of variants in bacterial genomes using nanopore long-read sequencing.
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nf-core-crispriscreen nf-core-crispriscreen Public
Process next generation sequencing data obtained from CRISPRi repression library screenings
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snakemake-bacterial-riboseq snakemake-bacterial-riboseq Public
Bacterial-Riboseq: A Snakemake workflow for the analysis of riboseq data in bacteria.
Python 5
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snakemake-ont-basecalling snakemake-ont-basecalling Public
A Snakemake workflow for basecalling and demultiplexing of Oxford Nanopore data using Dorado.
Python 5
Repositories
- snakemake-assembly-postprocessing Public
A Snakemake workflow for the post-processing of microbial genome assemblies.
- snakemake-bacterial-rnaseq-processing Public
A Snakemake workflow for the processing of short read rnaseq data in bacteria.
- snakemake-simple-mapping Public
A Snakemake workflow for the mapping of reads to reference genomes, minimalistic and simple.
- snakemake-ms-proteomics Public
Pipeline for automatic processing and quality control of mass spectrometry data
- hybracter Public Forked from gbouras13/hybracter
Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
- snakemake-crispr-guides Public
A Snakemake workflow for the design of small guide RNAs (sgRNAs) for CRISPR applications.
- snakemake-bacterial-riboseq Public
Bacterial-Riboseq: A Snakemake workflow for the analysis of riboseq data in bacteria.
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