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rabioinf (Rina Ahmed-Begrich) · GitHub

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  1. MPUSP/snakemake-bacterial-riboseq MPUSP/snakemake-bacterial-riboseq Public

    Bacterial-Riboseq: A Snakemake workflow for the analysis of riboseq data in bacteria.

    Python 5

  2. MPUSP/snakemake-ont-basecalling MPUSP/snakemake-ont-basecalling Public

    A Snakemake workflow for basecalling and demultiplexing of Oxford Nanopore data using Dorado.

    Python 5

  3. MPUSP/snakemake-bacterial-rnaseq-processing MPUSP/snakemake-bacterial-rnaseq-processing Public

    A Snakemake workflow for the processing of short read rnaseq data in bacteria.

    Python 3

  4. MPUSP/snakemake-assembly-postprocessing MPUSP/snakemake-assembly-postprocessing Public

    A Snakemake workflow for the post-processing of microbial genome assemblies.

    Python 2

  5. MPUSP/ignatov_et_al_2025 MPUSP/ignatov_et_al_2025 Public

    R scripts and source data to reproduce the primary results presented in the manuscript: Ignatov et al. (2024).

    R 1

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