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ekg (Erik Garrison) · GitHub

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  1. vgteam/vg vgteam/vg Public

    tools for working with genome variation graphs

    C++ 1.3k 219

  2. waveygang/wfmash waveygang/wfmash Public

    base-accurate DNA sequence alignments using WFA and mashmap3

    C++ 222 26

  3. pangenome/pggb pangenome/pggb Public

    the pangenome graph builder

    Shell 513 50

  4. pangenome/seqwish pangenome/seqwish Public

    alignment to variation graph inducer

    Rust 165 22

  5. pangenome/smoothxg pangenome/smoothxg Public

    linearize and simplify variation graphs using blocked partial order alignment

    C++ 64 11

  6. freebayes/freebayes freebayes/freebayes Public

    Bayesian haplotype-based genetic polymorphism discovery and genotyping.

    C++ 877 275

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