jbloomlab

Jesse Bloom's lab GitHub account

78 followers
Seattle, WA, USA
https://jbloomlab.org/
@jbloom_lab
https://bsky.app/profile/jbloomlab.bsky.social
jbloom@fredhutch.org

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phydms phydms Public

phylogenetic analyses informed by deep mutational scanning data

HTML 15 6
dms_tools2 dms_tools2 Public

software for the analysis and visualization of deep mutational scanning data

Python 34 20
dmslogo dmslogo Public

draw sequence logos tailored to deep mutational scanning (DMS) data

Jupyter Notebook 12 1
neutcurve neutcurve Public

Fit and plot neutralization curves

Jupyter Notebook 9 4

Repositories

Type Language Sort

prot-struct-viz Public
Configurable interactive views of protein structures

jbloomlab/prot-struct-viz's past year of commit activity

Python 0 MIT 0 0 0 Updated Aug 28, 2026
flu-seqneut-2026 Public
Near real-time data on the human neutralizing antibody landscape to influenza virus as of the summer of 2026 to inform vaccine-strain selection

jbloomlab/flu-seqneut-2026's past year of commit activity

Python 0 MIT 0 1 0 Updated Aug 27, 2026
nextstrain-prot-titers-tree Public
Build interactive `nextstrain` trees on protein sequences designed to display neutralization titer values

jbloomlab/nextstrain-prot-titers-tree's past year of commit activity

Python 0 MIT 1 1 0 Updated Aug 25, 2026
seqneut-pipeline Public
Pipeline for analyzing sequencing-based neutralization assays

jbloomlab/seqneut-pipeline's past year of commit activity

Python 3 MIT 2 2 0 Updated Aug 23, 2026
tree-annotated-plot Public
Annotate the axis of an Altair / Vega-Lite plot with a phylogenetic tree.

jbloomlab/tree-annotated-plot's past year of commit activity

Python 0 MIT 0 0 0 Updated Aug 20, 2026
bloomlab-coding-standards Public
standards for coding using agentic AI (tailed for Claude Code)

jbloomlab/bloomlab-coding-standards's past year of commit activity

0 0 0 0 Updated Aug 15, 2026
neutcurve Public
Fit and plot neutralization curves

jbloomlab/neutcurve's past year of commit activity

Jupyter Notebook 9 GPL-3.0 4 0 0 Updated Aug 13, 2026
SARS2-mut-fitness Public
Observed substitution counts of SARS-CoV-2 compared to those expected under the mutation rates

jbloomlab/SARS2-mut-fitness's past year of commit activity

Jupyter Notebook 22 MIT 8 3 1 Updated Aug 6, 2026
jbloomlab.github.io Public
A website for the Bloom lab

jbloomlab/jbloomlab.github.io's past year of commit activity

Vue 1 0 0 0 Updated Aug 3, 2026
flu-seqneut-2025to2026 Public
Near real-time data on the human neutralizing antibody landscape to influenza virus as of early 2026 to inform vaccine-strain selection

jbloomlab/flu-seqneut-2025to2026's past year of commit activity

HTML 3 MIT 1 0 0 Updated Jul 26, 2026

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