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bit-parallel

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bmouler / iupac-scan

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Bit-parallel scanning of overlapping degenerate IUPAC DNA motifs in FASTA and FASTQ

python bioinformatics genomics dna fasta fastq iupac motif-search shift-and bit-parallel

Updated Aug 15, 2026
Python

A C++20 project exploring high-performance UTF-8 and UTF-16 substring searching in the Windows kernel. It combines Boyer-Moore-Horspool, SWAR, and SIMD (AVX2/NEON) with dynamic routing to mitigate processor state-save overheads, optimizing throughput across varying buffer sizes.

high-performance neon windows-kernel simd avx2 vectorization arm64 substring-search cpp20 boyer-moore-horspool swar ring-0 windows-kernel-development windows-kernel-driver bit-parallel

Updated Aug 26, 2026
C++

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bit-parallel · GitHub Topics · GitHub

bit-parallel

Here are 2 public repositories matching this topic...

bmouler / iupac-scan

adanil-code / KmStrSearch

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