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molecule-generation · GitHub Topics · GitHub

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molecule-generation

Here are 84 public repositories matching this topic...

AI molecular design tool for de novo design, scaffold hopping, R-group replacement, linker design and molecule optimization.

  • Updated Aug 9, 2026
  • Python

Plausibility checks for generated molecule poses.

  • Updated Mar 7, 2026
  • Python

Official code repository of < CBGBench: Fill in the Blank of Protein-Molecule Complex Binding Graph >

  • Updated Sep 14, 2025
  • Python

Implementation of MoLeR: a generative model of molecular graphs which supports scaffold-constrained generation

  • Updated Jan 4, 2024
  • Python

Geometric Latent Diffusion Models for 3D Molecule Generation

  • Updated Jun 9, 2023
  • Python

An automated scoring function to facilitate and standardize the evaluation of goal-directed generative models for de novo molecular design

  • Updated Apr 21, 2026
  • Python

Official Code Repository for the paper "Score-based Generative Modeling of Graphs via the System of Stochastic Differential Equations" (ICML 2022)

  • Updated Nov 16, 2023
  • Python

Official repository for MolCRAFT series

  • Updated Oct 27, 2025
  • Jupyter Notebook

[Briefings In Bioinformatics] DrugAssist: A Large Language Model for Molecule Optimization

  • Updated Apr 2, 2025
  • Python

[ICLR 2022] Data-Efficient Graph Grammar Learning for Molecular Generation

  • Updated Aug 29, 2023
  • Jupyter Notebook

Pose checks for 3D Structure-based Drug Design methods

  • Updated Nov 3, 2024
  • Python

Codes for our paper "UniMoMo: Unified Generative Modeling of 3D Molecules for De Novo Binder Design" (ICML 2025)

  • Updated Dec 7, 2025
  • Python

MolDiff: Addressing the Atom-Bond Inconsistency Problem in 3D Molecule Diffusion Generation

  • Updated Jul 23, 2024
  • Python

Recurrent Neural Network using randomized SMILES strings to generate molecules

  • Updated Feb 5, 2020
  • Python

Structure-based Drug Design; Reinforcement Learning and Genetic Algorithm

  • Updated Jul 17, 2023
  • Python

[ICLR 2024] Protein-Ligand Interaction Prior for Binding-aware 3D Molecule Diffusion Models

  • Updated Sep 6, 2024
  • Python

Implementation for ICLR2024 Oral paper "Unified Generative Modeling of 3D Molecules with Bayesian Flow Networks"

  • Updated Jun 4, 2024
  • Jupyter Notebook

A tool for spatially-aware molecule design and optimisation via Equivariant Diffusion and GCN

  • Updated Jul 28, 2026
  • Python

Official repository for "Categorical Normalizing Flows via Continuous Transformations"

  • Updated Feb 22, 2021
  • Python

Implementation for NeurIPS 2023 paper "Equivariant Flow Matching with Hybrid Probability Transport for 3D Molecule Generation"

  • Updated May 30, 2024
  • Python

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