DL+DiReCT - Direct Cortical Thickness Estimation using Deep Learning-based Anatomy Segmentation and Cortex Parcellation

Tools for MRI mouse brain morphometry

A python module designed to reduce your brain load while accessing FreeSurfer brain surface and morphometry data files of single subjects and groups.

Fluvial Corridor Toolbox QGis Plugin

ITK filters that quantify bone morphometry

This plugin provides tools for geomorphological analysis in drainage basins.

Symmetrization of 2D pattern using nonrigid landmark registration

implementation of the Bayesian Force Inference technique based on the work of Ishihara and Sugimura

MorphoHub software modules and its code

Source code and workflow protocols for SOCR 3D Cell Morphometry Project

Fluvial Corridor Toolbox Applications

Brain Morphometry Estimation: From Hours to Seconds Using Deep Learning

Stereological macros for ImageJ

Plugin de QGIS que delimita cuencas hidrográficas automáticamente a partir de un DEM y puntos de exutorio, calculando índices morfométricos (Kc, Rr, Dd) y perfiles topográficos por cuenca. Pipeline de 9 pasos con Whitebox Workflows, GDAL y la API de QGIS. Desarrollado en la Escuela de Geografía, UACh.

Cell counter integrated with Grid for manual morphometry

Web tool for measuring Longissimus dorsi muscle area (AOL) and subcutaneous fat thickness (EGS) from B-mode ultrasound images — interactive annotation, pixel-to-cm calibration, and batch Excel export.

MorphoLogic extracts comprehensive neuronal morphometrics from 2D SWC reconstructions and can perform morphology-aware mapping to project concurrent microscopy signals or (synaptic) puncta onto reconstructed neurons. Outputs include per-cell diagnostic visualizations and per-dataset aggregated CSV tables spanning multilevel summaries.

Semi-automated Fiji/ImageJ macro for LMA, subcutaneous fat and muscle depth measurement from B-mode ultrasound images

Semi-automated ImageJ macro for cerebellar lobule segmentation and length quantification. Supports boundary detection, Purkinje cell-based mask refinement, and ROI export for downstream analysis.

Longitudinal Imaging Deformation Analysis Repository