Schloss Lab Tools for Reproducible Microbiome Research 💩

Python wrapper for the bioinformatics tool mothur

16s rRNA Sequencing Meta-analysis Reproducibility Tool (using mothur).

Mothur procedures for 16S and ITS analysis

Microbial Community Analysis with Chipster

Snakemake template for microbial amplicon sequence analysis with mothur.

Easy-to-use tool facilitating work with Mothur.

microbiome analysis of ant colonies

The manuscript accompanying the OptiFit algorithm in mothur

Repositorio de pipelines necesarios para analizar secuencias de amplicones illumina con mothur. Se incluyen análisis con asv de bacterias y de hongos (estos últimos poco explicados por Schloss en su SOP).

Milk Metagenomics Analysis of Cow Milk Samples across Global sites Using Mothur

Identifying gut microbiome features associated with the risk of acquiring an enteric drug-resistant organism (e.g. vancomycin-resistant Enterococcus and resistant gram-negative bacteria) in patients recently discharged from acute-care hospital and admitted into nursing homes.

Annotate PICRUSt2 functional IDs (KO, EC, Pfam, etc.) using description mapfiles

CUSO Microbiome analysis workshop 2020

Vectorization and Unsupervised Learning of Mouse Operation Taxonomic Units to determine which species of bacteria form distinct groups in a dataset.

16S rRNA microbiome analysis pipeline using Mothur for Illumina paired-end sequencing data.

microbiome analysis of ant colonies