release version

Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data

A tool for accurately detecting actively translating ORFs from Ribo-seq data

Annotate DNA sequences for Gene Ontology terms

Package to extract Unannotated Regions from prokaryotic genomes report coding and pseudogenised genes delimited by stop codons - Named StORFs (Stop - Open Reading Frames)

DEPRECATED: Use Cenote-Taker 3 instead

A library of functions with the goal of mapping nucleotide-containing FASTA files for protein encoding ORFs as well as a computational analytics research paper on said functions

eSim-to-OpenROAD Design Flow Plugin

A collection of various biopython scripts.

An assembly language operating system for the Raspberry Pi Zero to identify genes in a DNA sequence.

Hands-on open-source ASIC design portfolio documenting the complete RTL-to-GDSII flow, SoC verification, and gate-level simulation using OpenLane, OpenROAD, SKY130, Caravel, and VSDSquadron.

Implementations of biological sequence analysis algorithms in Python: dynamic programming alignment, Needleman-Wunsch, BLAST, ORF extraction, motifs and phylogenetic analysis

BioMatrix.AI sets a new benchmark for bioinformatics tooling, delivering enterprise‑grade AI explanations, premium UI/UX, and a robust hybrid RAG engine—all within a modern, serverless stack.

This code is not working perfectly as it prints out the incorrect frame numbers. However it is a good starting point for anyone doing a project. Feel free to fork or commit.

RTL-to-GDSII baseline for a QoS egress scheduler — OpenROAD/ORFS on Nangate45

PDN inspection, PDNSim, and signoff handoff for a QoS scheduler — repeatable release Tcl

A Python-based tool for analyzing DNA sequences: calculates GC content, reverse complements, and detects non-overlapping open reading frames (ORFs).

Timing and congestion rescue for a QoS scheduler — one-variable experiments, conditional RTL escalation

Find open reading frames (ORFs) in DNA sequences