✂️ ⚡ Rapid haploid variant calling and core genome alignment

Strelka2 germline and somatic small variant caller

Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis

Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

tools for analyzing and exploring genetic relationships

An Open Source Web Application for Genetic Data (SNPs) using 23AndMe and Data Crawling Technologies

A fast 23andMe DNA parser and inferrer for Python

tools for reading, writing, generating, merging, and remapping SNPs

Find causal cell-types underlying complex trait genetics

A fast 23andMe genome text file parser, now superseded by arv

Wrapper to a number of SNP web APIs

Population Genetics in Julia

Compressed storage for SNP data

Pan-genomic sequence analysis

Datastructures and algorithms for working with genetic variation

Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.

A tool for simulating random mutations in any genome

An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.

An Efficient Swiss Army Knife for Population Genomic Analyses in R

A haplotype analysis toolkit for natural variation study.