XPRESSplot supports Python 2.7 and >=3.5

Berg JA, et. al. (2020). XPRESSyourself: Enhancing, standardizing, and
automating ribosome profiling computational analyses yields improved insight
into data. PLoS Comp Biol. doi: https://doi.org/10.1371/journal.pcbi.1007625

pip install xpressplot

• Tested on 64-bit Linux, compatible with Mac OS X
• Python and R are required
• If PyPi and Conda are not already installed, these should be installed
• If using the interactive notebook provided, Jupyter needs to be installed if not already

• Download the repository and modify the interactive Jupyter notebook to get started fast!
• Read the instructions as you navigate through the code blocks for a guide on how to use the example code
• Code blocks are run by selecting the block and pressing Shift + Enter
• See documentation for more detailed instructions

• If working with XPRESSplot within an interactive notebook (i.e. Jupyter Notebook, Atom Hydrogen, etc), you must include the following line of code after importing XPRESSplot

import XPRESSplot as xp
%matplotlib inline

• Assumes all dataframes are i * j (or genes * samples, except in certain cases, see documentation for help)

>>> geo.head()
name       GSM523242  GSM523243  GSM523244  GSM523245  GSM523246  GSM523247    ...     
GeneA    8.98104    8.59941    8.25395    8.72981    8.70794    8.10693    ...       
GeneB      5.84313    6.59168    8.27881    6.64005    4.65107    7.19090    ...       
GeneC       6.17189    5.73603    5.55673    5.69374    6.77618    5.84524    ...       
GeneD      6.97009    6.80003    5.56620    7.43816    7.36375    5.85687    ...       
GeneE   10.24611   10.13807    8.84743    9.72365   10.42940    9.17510    ...   

[5 rows x 145 columns]   

Information on updates to the software can be found here.