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k-mer-hashing

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Here are 4 public repositories matching this topic...

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BirolLab / ntHash

Star 111

Fast hash function for DNA/RNA sequences

bioinformatics genomics bloom-filter hash hash-algorithm hash-methods k-mer-hashing
  • Updated Sep 4, 2026
  • C++

luizirber / nthash

Star 36

ntHash implementation in Rust

bioinformatics genomics hash-functions hash-algorithm hash-methods k-mer-hashing
  • Updated Jul 12, 2024
  • Rust

MatthewRalston / kmerdb

Star 13

Python CLI for alignment-free genomics.

bioinformatics python-cli k-mer k-mer-counting k-mer-frequency k-mer-hashing bgzf
  • Updated May 25, 2026
  • Python

Morteza1814 / PARMIK

Star 0

PARMIK is a fast and memory-efficient tool for identifying the "Partial Match" region between two genomic sequences.

smith-waterman k-mer k-mer-frequency k-mer-hashing genome-analysis bwa-mem metagenomic-analysis blastn sratoolkit genome-alignment dna-processing environment-sampling
  • Updated Jul 19, 2025
  • C++

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