SUPPA: Fast quantification of splicing and differential splicing

AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.

scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two conditions

Interactive R package to quantify, analyse and visualise alternative splicing

A Nextflow pipeline for end-to-end long-read proteogenomics analysis

SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.

Integrative Pipeline for Splicing Analyses (IPSA) in Nextflow

Docker to run rMATS for splicing quantification and analysis

Docker to run MISO for splicing quantification and analysis

Docker to run VAST-TOOLS for splicing quantification and analysis

Docker to run Whippet for splicing quantification and analysis

Single-cell alternative-splicing analysis

Docker to run SUPPA for splicing quantification and analysis

Analysis pipeline for decoding hepatitis B virus and host splicing patterns using AI models

Calculate five major splicing events using rMATS followed by annotation