Making Protein folding accessible to all!

Generation of protein sequences and evolutionary alignments via discrete diffusion models

Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)

A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0

MSA(Multiple Sequence Alignment) visualization python package for sequence analysis

abPOA: an SIMD-based C library for fast partial order alignment using adaptive band

A Julia package to analyze protein sequences, structures, and evolutionary information

Implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTorch (NeurIPS 2021)

A modern multiple sequence alignment browser - built for the terminal.

Exploring Evolution-aware & free protein language models as protein function predictors

Fast and accurate protein structure prediction

Scalable long read self-correction and assembly polishing with multiple sequence alignment

Graph based multi genome aligner

An AI-native molecular biology workbench for Claude Science: Claude opens sequence files and prepares analyses on request; you annotate, align, and review them in an interactive workspace.

Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.

🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations

Improved RNA Secondary Secondary Structure Prediction using Evolutionary Profile, Mutational Coupling and Two-dimensional Transfer Learning

TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain

Multiple sequence alignment visualizer

High throughput tool for tall and wide multiple sequence alignment.